Array 1 9279-8062 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260204.1 Porphyromonas gingivalis W4087 Scaffold26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9278 30 100.0 38 .............................. TCGCCTGACCGACATCGACCGAACGCAAAAGATGACAT 9210 30 100.0 37 .............................. ACGCTGTCTCTCGCTGCTAATGCAGACCAGCAAACAT 9143 30 100.0 35 .............................. GCCGTCTTCAAAACAAGTTTATAGAGCTGACCGAC 9078 30 100.0 37 .............................. CCCCGACGCCCCGGGCATATTCGACCCCAATAACCCG 9011 30 100.0 36 .............................. CTATTTTTTTCGTACGTTTTTCTCGTAAGTTGTTGT 8945 30 100.0 35 .............................. CTTGCCCAAATAGCGGCCCTTCAGGGGGCAGTAGA 8880 30 100.0 36 .............................. GGCTTTCTTCCACCCACTTCCACGAATAGCCTGCTT 8814 30 100.0 36 .............................. GTGTGATACATAACCCCCCTCTAACCTTTATGCCCT 8748 30 100.0 36 .............................. CCCCGTGGTAACTCATACCACCGACTATTCCACCGT 8682 30 100.0 36 .............................. GAGATATCGGCTGGCGCACGGACATGCGCGCCTCTG 8616 30 100.0 36 .............................. GCATCCGCCTCGTAGGCGGAACGGCCCTGTCCGTAG 8550 30 100.0 34 .............................. GAGTGGTGTATGTCTGCCCTGTTCGGTACCATGC 8486 30 100.0 36 .............................. ACATCCGACTTCAATGGGCAGTTTACACTTTTGCTA 8420 30 100.0 36 .............................. CATGTGTTATGTCCAAAATAATTTTCAGCAGACTAT 8354 30 100.0 36 .............................. GGTTAAGCTCGTCCATCCGCTTGTTGTATTCTTTTT 8288 30 100.0 36 .............................. TGTTGGGTCTGCTGCTCTGCCAGCTTGTGCCCTATC 8222 30 100.0 34 .............................. GGGCGAAGTCCATAAAGTCTCCTATAAGGAGTGA 8158 30 100.0 37 .............................. ACAACTGCACCCCAGGGGATTCCTACTGCAGATATTC 8091 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 100.0 36 ATTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TGGTGTTTTCTTACGTCGAACTGACGTTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGAAGTAGTATAATGGATA # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGAGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGACTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 175939-175573 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260229.1 Porphyromonas gingivalis W4087 Scaffold417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 175938 36 100.0 30 .................................... TTGTTCGTTGAGAGTTCGAATATCATTGTG 175872 36 100.0 30 .................................... AGATGACTTAGTTATTTGATATAATCTCTT 175806 36 100.0 30 .................................... AGTAGTTATAATCTATATTTCTTTTATTTA 175740 36 100.0 30 .................................... GTTCAAACAGATATTCTTTTTCTACCTTTT 175674 36 100.0 30 .................................... GGAGCGGAGCGGGAAGATGCCTACTACGCT 175608 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.6 30 GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC # Left flank : AAGCCCGAAACGGCCGAACGGATGATCAGCATTCATCAGGAGCTTACCCAAACCGTTAGAGAAGCCATCGCACTGAAGAAGCGAACGTTGAACTTTTGAGTGCGAACCGGCAGGAGTATAGGAATGATTTTTTGAGAGAAAATAGCATAAACCCGACCGTAGAGAGTCATTTTTTCAATCCTAATATTCCATTAAAATGATGATGACAGACTGTTTTTCGCCGGCTTGCAGTGGCTCCAAAGCCTTAGCGTCACTCACTTTCTGTGGAATGATGACTTCTCAATCGGTTTCAAATTCGATGGGGGTAGTTGGATCTACCCTCTATTCGAAGGGTACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCTACCCTCTATTCGAAGGGTACACACAACATACACGTCAATAACAAGATTATCAATGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCTACCCTCTATTCGAAGGGTACACACAACATGATTCTTGATTGGTGGCTTGGGCGTTGGAATGTGCAGTAGTGTGGGGATTCTTCCTCGTTGGGGCTTTTTCGCTAAATTTGCAGGCGGACGAGGTGCTCCCCTCTTCTGTGAATTTGTACTGGGGAGAGCTTTCCCTTTCTATGGAATGACTTTGTAAACGACTAAATGAATGATAGATATGTGCTCCGATCCTTCTCTTTCCTGCATTCTTATTCGGCCGGTTTCGTTCGGCCTGTGTGGTTATATGCCGGCGCGTATGGCTGATACAAGCCTGCTGTATGAGGGGTAGAGCCTGAGAGTCGTTTCGTACCCCTTCGAAATAGATGAGGCACCCATCAAGTTCCTGCAGGAACTCGGTGGGTGCCTCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 33482-33710 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260263.1 Porphyromonas gingivalis W4087 Scaffold692, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 33482 31 100.0 35 ............................... CCAACCTCTTCCGTGTAATAGGTCCGGATGGTTAT 33548 31 100.0 35 ............................... CCAACTCAGACAAGTACAACAAACTACCAATATGT 33614 31 100.0 35 ............................... CCAACTCATAATCATCGCTGTTCTACTTGCATATA 33680 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 100.0 35 GTTGTCTCCACCCTTCTAACTAAGGGTATTC # Left flank : CTCCCTCCACAATAGAAACATCGGCTTCACTGCCGTAGCGATCATAGAGTCGGGCGATATGCTCCCGACTCATCATGAAAGCATCCAGATTCACCGTTTCCGTTCCGCATGCAAGGCGGTGATACTTAGGATCGATATAGTCGGGACCGCATTTGAAAGGCTGCACTTTGAGACCGTGCCTTCGAAGCAATCGTAGCAATCCGAGCGTGAAAGAAGTCTTTCCACCACCCGATGAAGCAGCACTGATAAGGAGATGAGAGCGTTTGATAGGAACAGACAATTATATGAGTTAAGGAAATCGGGATTTACAGACAAAAGCCAAGGAAGAGAACGAAAGGCCTCCCGATCGAATGGATAGCTGCACACAAACACTGTCGGCTACAACCCTCTCCTCCGAACACGATCCCCCTATCCATTTTCCATCACTTTAGCGATCGCTAATTTAGGAATACTTCCCCATCAACAGCACAACTTCCCCTCTTTCTCCTTTCGGAATAATA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCCACCCTTCTAACTAAGGGTATTCCCAACCGTAGCCCCTTGGAAACGTTTCGAAATACAGGTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACCAACGACCTGTGGGATAGCTTTGGATCTCCGTTGTCTCCACCCTTCTAACTAAACGCCAGTTCGATCTAAGCGAACATACCATAAAAATAACAAGTAGCTGTAAATCATACTCTTTTGTGATTCTCCGGCTGCATAATGATCGGGAAGATGGGGCGGCTTATAAGTCATTGGGCTTCAGATGTAGATAAAAAGCCATCTGAAAGCAATATAAGTGCCTGAAAAACGCTGTGTGGAAAATAAAACGCACTAATAACCAATGTGTTGTGCCATTCCTTTATATCGAACTCACATTAACTAAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCTCCACCCTTCTAACTAAGGGTATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 34422-34184 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260263.1 Porphyromonas gingivalis W4087 Scaffold692, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================ ================== 34421 38 100.0 28 ...................................... AAAGACAGAAATGGAATGAAATTCCTCT 34355 38 100.0 28 ...................................... TTACGAGGGTTTAGATAGTCATGAGCAA 34289 38 100.0 28 ...................................... TCATTTCGTCTTTTGCTCGGTTATCGCA 34223 37 81.6 0 .T....................-.T....T..T.T..A | C,A,T [34191,34195,34197] ========== ====== ====== ====== ====================================== ============================ ================== 4 38 95.4 28 TGGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCGGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACCCCCTCGTATATTTCCTTGCCGTTTTTGTCGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACAAGATCCAATTCGGATATAAAATGATCCCGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATACCCTTAGTTAGAAGGGTGGAGACAACATCAAAGGCTTTATCTGTGATTAGGGGT # Right flank : GGAATGGCACAACACATTGGTTATTAGTGCGTTTTATTTTCCACACAGCGTTTTTCAGGCACTTATATTGCTTTCAGATGGCTTTTTATCTACATCTGAAGCCCAATGACTTATAAGCCGCCCCATCTTCCCGATCATTATGCAGCCGGAGAATCACAAAAGAGTATGATTTACAGCTACTTGTTATTTTTATGGTATGTTCGCTTAGATCGAACTGGCGTTTAGTTAGAAGGGTGGAGACAACGGAGATCCAAAGCTATCCCACAGGTCGTTGGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACCTGTATTTCGAAACGTTTCCAAGGGGCTACGGTTGGGAATACCCTTAGTTAGAAGGGTGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATACCCTTAGTTAGAAGGGTGGAGA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 34747-34579 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260263.1 Porphyromonas gingivalis W4087 Scaffold692, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 34746 37 97.3 29 G.................................... CCCCTCGTATATTTCCTTGCCGTTTTTGT 34680 37 100.0 28 ..................................... AAGATCCAATTCGGATATAAAATGATCC 34615 37 91.9 0 ..................................NNN | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 96.4 29 CGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : ACAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGTGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATACCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATACCCTTAGTTAGAAGGGTGGAGACAACATCAAAGGCTTTATCTGTGATTAGGGGTTGGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACAAAGACAGAAATGGAATGAAATTCCTCTTGGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACTTACGAGGGTTTAGATAGTCATGAGCAATGGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAACTCATTTCGTCTTTTGCTCGGTTATCGCATTGTTGGGAATACCCTTAGTTAATGTGAGTTCGATATAAAGGAATGGCACAACACATTGGTTATTAGTGCGTTTTATTTTCCACACAGCGTTTTTCAGGCACTTATATTGCTTTCAGATGGCTTTTTATCTACATCTGAAGCCCA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //