Array 1 281356-282096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMB010000006.1 Listeria monocytogenes strain 2010L-1846 NODE_1_length_1025270_cov_34.3855_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 281356 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 281421 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 281486 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 281550 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 281616 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 281680 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 281743 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 281807 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 281872 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 281936 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 282002 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [282025] 282068 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 429676-431759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXMB010000011.1 Listeria monocytogenes strain 2010L-1846 NODE_3_length_437420_cov_38.3433_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 429676 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 429742 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 429808 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 429874 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 429940 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 430007 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 430073 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 430139 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 430205 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 430271 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 430337 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 430403 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 430469 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 430535 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 430601 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 430667 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 430733 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 430799 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 430865 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 430931 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 430997 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 431063 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 431130 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 431196 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 431262 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 431328 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 431394 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 431460 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 431526 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 431592 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 431658 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 431724 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //