Array 1 1063870-1063503 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LS483330.1 Streptococcus pyogenes strain NCTC8328 chromosome 1, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1063869	    36	 100.0	    30	....................................	AGGCAGTATGTGTGCCATCTTTACGTACTA	
   1063803	    36	 100.0	    30	....................................	CAATGCGCTACCCTCACCGTTTTCCAATCA	
   1063737	    36	 100.0	    30	....................................	ATGCTTTTTTTAACAAACTGACTGCTAACG	
   1063671	    36	 100.0	    30	....................................	AGATGAAGAGGACTGATTTTGGTGATTCGT	
   1063605	    36	  94.4	    30	..............T.......G.............	GACAGATTTTTGATTATGTGTTGCCGAATG	
   1063539	    36	  88.9	     0	......T................G........TT..	|                             	T [1063510]
==========	======	======	======	====================================	==============================	==================
         6	    36	  97.2	    30	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTTCTTAGGAGTAAAAGTAGAAACACAAAGTGATGCTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACCAAGAAAAAGTTAGTCGTCTTTGTCAATAGCGGAGCTTTTCTAACAAAAGAGGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATATTCTTAATAAATGCAGTAATACAGGGGCTTTTCGAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG
# Right flank :  GGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCTTGGTGATGATGGAGGTATTTTTAACATGGTGCATGGGTCTCATTCAAAAGACTCTGCTAGGCGTGAGATTGTCCTTTGGTCTCATCAAAGTAATCTCGGTAGCTCCGCTATTCTCTTGCAAGATAATCCGTAAGAAAAGATAGGCAAAGGCCTACCTTTTTTGTTATAATAGAAGGAAAGACTAAATGTATAGGAAAATAGAATGAACAGTCAAGATTTAAAAAAACGTCAGGAGAAGATTCGTAATTTCTCCATTATCGCACATATTGACCATGGCAAATCTACTCTCGCTGACCGCATTTTGGAAAAGACAGAGACGGTTTCGTCTCGTGAAATGCAGGCTCAGTTATTGGACTCCATGGATTTGGAGCGTGAGCGTGGGATTACCATCAAGTTAAACGCCATTGAGCTTAATTACACGGCTAAAGATGGGGAAACCTACATTTTCCACCTTA

# Questionable array : NO	 Score: 6.12
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-2.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.55   Confidence: HIGH] 

# Array family : II-A/B/C [Matched known repeat from this family],   
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