Array 1 183593-183295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH603163.1 Thiorhodovibrio sp. 970 Thi970scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 183592 35 100.0 32 ................................... TTAGACTGCTCATTCAATACCCAATCCATCTT 183525 35 100.0 31 ................................... TTAACGGTATCATTTCCTGCTGCAATAAATG 183459 35 100.0 30 ................................... TTATGATTATTCGGATCATCACCAGACTTA 183394 35 100.0 30 ................................... CCAAAATTGTGTATTCTGGAAATTTGTTGG 183329 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================ ================== 5 35 100.0 31 CTCCCCGAGAGGGACAGCCCGGCCGGGGTTGCGAC # Left flank : ACGCGTAACGGCACCTTTGAGTTTCTCGGATTCGAGTTTCGCTGGGGACGAGGGCGTTGGGGAAAACCCGCGCTCAAACGGCGCACGGCACGGAAGAAATACCGCGCCTCCCTGGCCAGTTTTCGAGACTGGTGTCGGGCACACTGCCGGATGCACAAGGACAAGTTCTTCGCGGCTCTCAATGCGAAGCTGCGCGGGTACTACAATTACTACGGTATCCGAGGCAACTCCGACAGCCTGGGTGACTTTTTCTACCATGTCACACGCATGCTCTACCGGGAGCTGAATCGCCGCAGTCAGCGGCGCAGTTACAACTGGAAGGGCTTTGCCGAACTGATCAAGGTGTTCAAGCTTGAGCGACCACGAATCTGCCACAGCTTCTGAGTATTCTGCAATGTTGCCGCGTGCGAAGCGAATCATTTCGAGGAGCCCGGTGCGGTAGTTCCGCACGCCGGGATCTGTACGGGGGCGGCCGGGTAACTGGCCGTCCTACCGTGATG # Right flank : GGATCGCAGGCACAAAAAAAGGCCAGTCAATTTCTATGACTGGCCTTTTTCTTTTTTTGGAAATGCCTGGCTGACCTACCGCGTTGCCGGTCTGGTAACAGCCAGCATACTGGTTTTTATGATGAAACCGGCTGCAAATACCACCCGTCTTTTTTCGCGTCTTGAAATTCGTTTGATCCTTTCGGATCGAGCACCGGATAACCGTGATTGCCATCGGAATCGGCATGGGCAGCAGCAGCGGGGCGCGCCATTTCAGTCAGTGCCTTGATGGGCGGCGAAGCAGCCCAGGCACCGCCCAGCGCGGCTTGATGCCAAGCGTCCATCGTTGCGGTAAAGGATTTAACGAACTCATTGAGTTGTGCCGGATCGCTTTTCGTGGGCTGATCGCAACGATTGGGGCGCAGCTCGCAGGCCGTGATTTCCATGCTCACCTGGCCATAGCCGAACGGTTTGCCCATGCCGATCAGGTGGCGCAATGTTTTCTTGCCACCCCAGGTTAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCGAGAGGGACAGCCCGGCCGGGGTTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 372110-370118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH603169.1 Thiorhodovibrio sp. 970 Thi970scaffold_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 372109 37 100.0 33 ..................................... GACACCAGAGAATCGTAGATGCTGGGCCGACGA 372039 37 100.0 31 ..................................... TGGTAAGTATAACATGGTTGCCAATAATAAC 371971 37 100.0 33 ..................................... CGTTGCCGTAGTCAATGGTGGTCGCTACGATTG 371901 37 100.0 34 ..................................... CGGAGGACTTGGTAGATGTCGTGTAGCATGATGG 371830 37 100.0 31 ..................................... CGATGGGACGCGCATAGTCTATGGTCATGTC 371762 37 100.0 34 ..................................... TTTCAGGGCGTAGTTCACTAGGTATGCCTTGAAG 371691 37 100.0 32 ..................................... GATATCGTCTGGGAGTGATGATACGGTAGTGT 371622 37 100.0 34 ..................................... ACACAGTGCTTCGAGGTACTGCGCAGGATGGACG 371551 37 100.0 33 ..................................... GCTCGAACCTGAGCGCTTGCTCAATCGACTCTC 371481 37 100.0 33 ..................................... AATATCGTGCGAGGGGTGTTCTTACCTTTCTTG 371411 37 100.0 33 ..................................... GCCATGTCGGTCTTTTGCTTCGCCGACAGCTCC 371341 37 100.0 33 ..................................... ACTTCCTCAATCGGCATCTTCTCAATCGCCGAG 371271 37 97.3 33 ..T.................................. AAGGCCACGCCATCCACGTGGCCTGAAGTGGCG 371201 37 100.0 33 ..................................... GATCGATCGAGGATCACTTTCAGGGCGTACTTA 371131 37 100.0 32 ..................................... TATGCGGGTGAAGGCTTCCTCTTGGGCTGGGG 371062 37 100.0 33 ..................................... TTTTCCTCCATTGACGCCCCGTCCTTTAAGGTC 370992 37 100.0 33 ..................................... CGCGGACTAAGGCCACGCCATCCACGTGGCCTG 370922 37 100.0 32 ..................................... GCCGCTCGCAGCGCGTAGTCCTCATCCGTCAT 370853 37 100.0 32 ..................................... GCAGTGCGGGCACTCTTCATGTCCGCGCGCGT 370784 37 100.0 34 ..................................... CTGCGCTGCGCCCGTCCTTGGGCGTTGTTGGTCG 370713 37 100.0 33 ..................................... GGCGCCCGCGCTTGCGATTACGTCTAGCTGGCC 370643 37 100.0 34 ..................................... GTTTGGAAGCGCCGGTATTAACGGAATCCATTTG 370572 37 100.0 33 ..................................... GCAGATTTTTGCCAGATGCGATTTGCGTGCGCT 370502 37 100.0 33 ..................................... GCTATCACCTCGACACCCAACAGATCCATGGCG 370432 37 100.0 33 ..................................... TTGTTCGAGTCGAGCGCCGGCTCGAAGCATCCT 370362 37 100.0 32 ..................................... TGCTCGCCGCCGAGGAAGCATCCTTCTGTTGG 370293 37 100.0 32 ..................................... GCCTGCAGACGGGCATCTCGCTGCCGTCGAAG 370224 37 97.3 33 .........................A........... AAGCTCGGCTTTTGCTTTGTACGCATTTTCTGC 370154 36 89.2 0 .........T.C......T.....-............ | G [370124] ========== ====== ====== ====== ===================================== ================================== ================== 29 37 99.4 33 GACCCGAACGATGACCCGATTTTTAGGGGATTAAGAC # Left flank : GAGGCACCGCCAATGGCCGCCAACCAAATACGTCCCTATCTGCTGGCCTACGACATTGCTGATCGCAAACGCCTCGTCCGGGTGCATCGCACCGTCAAAGGTTACGGAATGCCCCTGCAGTATTCAGTCTTTCTCGTTGTTGGCACCAGCCGCACCCTTGATGAACTGCTCGGCGAGCTCGACGACATCATCAACCCCAAAGAAGACGACATCCGCGTCTACCCCCTGCCGCTCCAATTCGACGCCGACCAATACGGCCGCCAATGGCTCCCCGGTGGCATCGACATCCCCGCCAACGCGGGTCTGACCGACGCCCTCGCCGCCATGGTCAACGCACAAAACATCCGCGTCGGTCGGACTTGACCATCGCTGAAACAAAGGCTAATTTTCAGTCAGGGAAAGCAACAAGCTACCAAATGCACGTGAACTTTTCTGTACACGATATTTCCGTCAGCTGCCCTTGTAAGTATCTGTTTAAATGGCGCTTTCCCGCTCTGGCG # Right flank : GGAAAATTCCGAGCGGCCGGCAGCCCAGGTCGAGCGCGCCTTGGCCCGGGTCGGTCTGCGGGGTTCTAGTGGTCTCTCGGCGGCTGGCTGGAAGACTGCATGGTCGAACTTGCCGGGGCGGACGCTTCGAGTCGGCCGGTTCAGCGCGTAGCGCCAAACTCTAGGCGCATGCCGGCGGTCGCTTGCGGATTGAGTGCTCCGTTTTGCCAGATGAGGTCACCATTGACCAAAGTTGCGAGCACGCGCGCGCTGAATGTCCGCCCCTCGAAGGGCGACCAGCCGCATTTGCTCAAGACTTCGGCGCGGTTGATGGCGTGCGGGCTGTTGGGGTCGATCAGCACCAGGTCGGCCCAGTAGCCCTCGCGGATGTAGCCGCGACCTTGAATGTTGAAACAATCGGCCACCGCGTGGCTGGTTTTCTCGACCAGGGTTTCCAGCGTCAGGGCGCCGACGCGCACATGTTCAAACAGACTGGGTAGGGCGTGTTGCACCAGCGGCAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCCGAACGATGACCCGATTTTTAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 115193-112174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH603171.1 Thiorhodovibrio sp. 970 Thi970scaffold_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115192 29 100.0 32 ............................. ATGGTCATTTCAGCCCCCGATCAGCGGAACAC 115131 29 100.0 32 ............................. CCCAATGTGATAGTGCGGGTGCCAGCCATGCC 115070 29 100.0 32 ............................. ACATCATCGAACAATTCTTTCAGCCACTGCGA 115009 29 100.0 32 ............................. TGTATGATTTGGCTCGGAGCGGCCTGAATATT 114948 29 100.0 32 ............................. TTGTGCCAGCCGGACAATTGGCGTTCCCGTCC 114887 29 100.0 32 ............................. TCGCCGGACGCTTCCAGGTAGCGCGCATCATC 114826 29 100.0 32 ............................. ACATTGACCCAGCTCGGTTTCGGAGATGAGCC 114765 29 100.0 32 ............................. CAACCATCGGCCCCCGGTACGGACGTACCCTC 114704 29 100.0 32 ............................. CCTCGAGCTGGTTCTGTCTCCGGTGTGGTTCT 114643 29 100.0 32 ............................. GAATACTTGACAGCTGAACTAACGCTGCGCGA 114582 29 100.0 32 ............................. TTGGTTTAGTTGATCGACCTCACGAGGATTAC 114521 29 100.0 32 ............................. GCGATCGCCTCCTCGGCAGTCAAGTCGCCGGG 114460 29 100.0 32 ............................. AAGCTTTTGTGTGTTCACGGTGATAAATTTGA 114399 29 100.0 32 ............................. CTGGAGCGTCTGCCACAAATCTCGACCGCGAC 114338 29 100.0 32 ............................. TTACGCGCGTAGAAACCCGCGCCGCTCTTGAG 114277 29 100.0 32 ............................. GTGCGAGCATTGAATGGGGCTTCTTCGGCAGC 114216 29 100.0 32 ............................. TTTTGGCATTTTCTTTCAGCCGTCTCGAAAGC 114155 29 100.0 32 ............................. GTCGCGCGCTCGCTCAGCTCCGGGTCAGCAAT 114094 29 100.0 32 ............................. TCTTCAAAAAACTCGGCGACCTGGGCGGTCTC 114033 29 100.0 33 ............................. CGAAACCCTTTAGACGCCCGAGGTTTGCCGTGC 113971 29 100.0 32 ............................. CTGCTGGGCAGTCCAGGATGGTGCAAAGGACG 113910 29 96.6 32 ............................T TTTTTAGACTCGCCGCTAGAAGAAACGCATAC 113849 29 100.0 32 ............................. TGGACCGAATAGCTGACTCGCTTAACGAAATC 113788 29 100.0 32 ............................. TATCTCGACAGCGGCGTCGTCGTCTTCAAACC 113727 29 100.0 32 ............................. CCGCCGCGCACAGCGTCAATGAAGCCGCTGCC 113666 29 100.0 32 ............................. GTGGTCTGCATTCTGTTATAGCTCCAATAGGG 113605 29 100.0 32 ............................. CTCTGGGCGCGGGCGTCGAACCCCGTTCAACC 113544 29 100.0 32 ............................. ACGCGGGGCAGCATCGCTAACTGACTGATTAT 113483 29 100.0 32 ............................. GTGCGAACGCGATCTTGTGTGAGGTGACCGCC 113422 29 100.0 32 ............................. CTGTCACGCGCAATGTCGAAGTGCCAATTAAC 113361 29 100.0 32 ............................. GTGTAAATGCTACACACAACAAAATACTTTTG 113300 29 100.0 32 ............................. GCGGACAACACAGGCTCAAAAACGAGCGCTGG 113239 29 100.0 32 ............................. CCACGTATCAGCTCACGGTGAGGATTCGGCAC 113178 29 100.0 32 ............................. GCAGCCGCATGACCGAGGCAAGGGCAACGTAC 113117 29 100.0 32 ............................. TCTACCGCTCCACAGACTCAGGCCAGACATGG 113056 29 100.0 32 ............................. TGTGTCGCATCTGCCGGGGCGGTCTATAACGC 112995 29 100.0 32 ............................. TCCGATCCAGAGCCTGTGGCGGTTAAACCAAC 112934 29 100.0 32 ............................. TATTTGCTTTAGCCCTCGCACGCTATCTTCGC 112873 29 96.6 32 ............................T TGGTCGGCCTCATCTGATCGAGGAATACCGAT 112812 29 100.0 32 ............................. GCCTCGCGCTCGTGACCAGCGGCTACGCGACC 112751 29 100.0 32 ............................. CTGTCCCAGTGCTCCCGGAGCGTTGGCACGAC 112690 29 100.0 32 ............................. CATACTGGTCTTTAAACTCAACCATGACCAAC 112629 29 100.0 32 ............................. ACTTTCGGCACCGAGCACGGCATCGACCAACG 112568 29 100.0 32 ............................. CAAAGCCTTCTTGTTTCAGCGCACGGCGCGCC 112507 29 100.0 32 ............................. ACGGAAACCCAGTCTCCGCCGATGTCTATTTA 112446 29 100.0 32 ............................. CTATCGGCGTCGTTGCGCTCACGGCGGGTTTT 112385 29 96.6 32 .........C................... ACCCGACCTCTCTCCTAGTCGGAGCGGGGTAC 112324 29 100.0 32 ............................. GCTGGTCAACATTTCAGACCTTGCCGCGTGGA 112263 29 100.0 32 ............................. TATTGGCGCGCTTCCTTACCCTTGGCGTTGCG 112202 29 96.6 0 ...................A......... | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.7 32 CTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCTGGCGGGCTCGATCCGCCAAAGACACCAAAAGAAGCGGTGCCGCCAGCGATTCCAGTTGAACAGGGTTATGGCGATGCTGGTCATCGCCACTGAGAATGTTCCACCACGCTTGCGCGGACGCTTGGCCGTCTGGTTGCTGGAGATTCGCGCCGGGGTTTACATTGGCGACCCATCAAAAAGGCTGCGGGAATTCATCTGGCAGCAGTTGCTAGAAGGTGTCGAGCAGGGCAATGCCGTGATGGCATGGAGCACCAATACTGAATCAGGTTACGATTTCGCCACCATCGGCGAAAATCGGCGAGTGCCAGTCGATTTCGATGGCTTGCGGCTGGTGAGCTTTCTTCCTCTGGAAAAGACTGCCGAGACGCCCGGTTCCCGGGACGGTAGGAGTGATGTAGGTCCTTAACAATCCGGAAGTTACTGATTTTTCGTGGGTCACGTTTGGTATATTTTTTCTTCAGCTTTTCTTCCTTCTAACTCAGCGGGTTAAAGGAAGT # Right flank : TGGTAAGAATCTCTGAGCCGGGACATGAAGGACTGTTCCCCGGGTTACACCGCGCAGTTTCAACTTGGTCGCGAAGCACAAATAGAGCCATTGTCCGCACCGGGAAGAAGTCTGGCGGTTAGCGCCTTGTGTCATCGCCGATCTGAAAATCTAAGCCTCTAGCCGACGTGAACATGTTGAGAAGATTTTCTTCTTCGTGTTCTTCCCCCTCTTTTTTTCATTTTCTATCTTCTCCGCTCTGTGCTTGTTCTGCGTCTTCTTCGCCGGTGCTGATGTTTGCCCAACTGCTATTTTATGTGCGCGATGCGCGCTCGGCGGCTTCGCGGTGCACAGCCGCGCCTTCGACGGTCTCAAGGGTGATTTTCCGATTGGTTTTCTGGTGTGGAATACGGCAAAAGCGGAGCCACTTAAGAAAATCCAGACCATGGCGCTCGACAAGACAGGTATGCTGATCAGTGAAAAGGCATTTGCGCCCGAGCAGGACCAAGCGCCGCTCTCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1712593-1716340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH603170.1 Thiorhodovibrio sp. 970 Thi970scaffold_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1712593 28 100.0 32 ............................ GAACGCCCAAGACCCACGACAGCGGAGCCCCT 1712653 28 100.0 32 ............................ CGCTGGTCTAAAGCCTGCGGCGCTTTGCCGTT 1712713 28 100.0 32 ............................ TGTTCCATCTTCTGGCGCTGTATTCGCTGAGC 1712773 28 100.0 32 ............................ TGTCATCTTCCCGAGTGACGACCTGGACCTGA 1712833 28 100.0 32 ............................ AGGTGGGCGGCCAGCGCGTCCAGCTCCAGGGC 1712893 28 100.0 32 ............................ TGTCGGTGCATCGGCCAGCCCCGGCGCCACCA 1712953 28 100.0 32 ............................ AGCTACAGCCAGGGCACCGCCAACCACTACAA 1713013 28 100.0 32 ............................ ATGATTCGGTTGAACAACATCCGAAACAAACC 1713073 28 100.0 32 ............................ TATAAGGGGGTAAAGAAAAAAGAGTTTAGCGA 1713133 28 100.0 32 ............................ CCGAACGGCACCGATTCTGTGCCGCTCCCATT 1713193 28 100.0 32 ............................ AGGGCATCGGTGCGCGACTGCGGGAAGCGCGC 1713253 28 100.0 32 ............................ ATGGATGCGCGTTGCATGGCGGCGCATCAATC 1713313 28 100.0 32 ............................ AGGGGAGAGCCGTTAAATCAACTTCACGGAAA 1713373 28 100.0 32 ............................ ATGATCGCCGCATCCATTACGCACTAGGAGAC 1713433 28 100.0 32 ............................ AGGCTCTCTCGCAGTTCATTGACCGCGCATTT 1713493 28 100.0 32 ............................ CCTGGCACCCGCCTAAGCTGCCCGGAGACATC 1713553 28 100.0 32 ............................ CGGATGACTACGGGCCTGGGTTTGTTTCTGAG 1713613 28 100.0 32 ............................ GCAGGCCACAGACGCCACACCTCGTCAAGCAC 1713673 28 100.0 32 ............................ ACCCCCAGAATCGTTGTCAGGATAATGACAGC 1713733 28 100.0 32 ............................ TACAAGCAGTCAGCGCTCTCTTTTCGAGAAGT 1713793 28 100.0 32 ............................ GCTGATCGACAGTCTGCTGACCCCTGGCGAGC 1713853 28 100.0 32 ............................ GTCGCGGTTTCGGCCAGGGCGTCGATGCCGTC 1713913 28 100.0 32 ............................ TCACTCGCAATCCTCCGGCAGTTGTGGCCCGA 1713973 28 100.0 32 ............................ ACACAGTCGACCCGGATACCGCAAAAGCCGAG 1714033 28 100.0 32 ............................ ATCTACAACGTCTGGAAGCTCCAGAACAAGAC 1714093 28 100.0 32 ............................ ACAGCCCAAGAGATCGGCCAGCGCCAGTTGTC 1714153 28 100.0 32 ............................ CCCATCTCTGGAACATCGGCGCCAGGCATGTC 1714213 28 100.0 32 ............................ TCGCGCTGCTCTCCGACAGCGGCTTTCGGTGC 1714273 28 100.0 32 ............................ TATAGAAATCATTGGAGACACCTGATCATAGA 1714333 28 100.0 32 ............................ TATCAAGATGCGCTGAATGCGGCTAATGGTGC 1714393 28 100.0 32 ............................ ACCAGAACAAGCCGTTGATGCACTGATAGCCC 1714453 28 100.0 32 ............................ ACTCCGATGCAATGCGCATCATTGAGCCTTGG 1714513 28 100.0 32 ............................ TGAACGCGGACGGGATTCCGCTCACCGAATGC 1714573 28 100.0 32 ............................ TGGGGCTCCACCGGCGTGGGTGATGGGCGTTC 1714633 28 100.0 32 ............................ GCGATGGGATTGAGGCGATTGAGCGTTATCGC 1714693 28 100.0 32 ............................ GTAAGCGCACGATCCATGATCTACGCGCTATC 1714753 28 100.0 32 ............................ ATCGCGCAAAACACGCGCATGGATACTGACAC 1714813 28 100.0 32 ............................ GTGCGCTGATCGGTGCGGGCGTGCCAGCCTAT 1714873 28 100.0 32 ............................ AGGCTGTTATTCAATCGAATGACTTTGGTGCT 1714933 28 100.0 32 ............................ GAGCTGAATACCACTTCAATGGTCGCGCCAAC 1714993 28 100.0 32 ............................ GTCACATACGCCGCACAAGGCACGCCTTATGT 1715053 28 100.0 32 ............................ CCCAGTACAAACACTCCATGGAAGTACCTTAA 1715113 28 100.0 32 ............................ AAGGCCACGCCCAAAACGAGCGTCGCCAGCAA 1715173 28 100.0 32 ............................ GTCAAGGTAGTGCGAGCGGATGACTCGCACAT 1715233 28 100.0 32 ............................ GCGCACGGCATCAGCACCTTCGGCGCAACCCT 1715293 28 100.0 32 ............................ ACTTCGACGCGGCAATGCCCATATGGGATGAC 1715353 28 100.0 32 ............................ TGCTAGTCTGGCACACGGAATTGTTTGTCGGC 1715413 28 100.0 32 ............................ TACGAGCCGGCCGACGCAACAATCGTCAAAGA 1715473 28 100.0 32 ............................ GGTGAGCTTATCAAGATGCGCGAACTCACCAT 1715533 28 100.0 32 ............................ CGACAGGCGTTGAGTTTTTCTTATTGACTTTG 1715593 28 100.0 32 ............................ GTCAAGCGCGCATCGGGATTTAGTCTGCACTC 1715653 28 100.0 32 ............................ TGAGCCCAGAGAGGCGCGCCCAGATGGAGGAA 1715713 28 100.0 32 ............................ TTACACGTCAGTTCAGATTGACGGAAGATCAC 1715773 28 100.0 32 ............................ GAACAAAGCCGAGCGCACTTGCACAAGCAGGC 1715833 28 100.0 32 ............................ CTACCGGGAACATTAAGCAGGGTAGCGGCGAC 1715893 28 100.0 32 ............................ ACCGACGGCCACCGCCTGCAACACCAGCGCAT 1715953 28 100.0 32 ............................ GCCACCCTGCGCGCCGCCCTCGATGCCGTCAT 1716013 28 100.0 32 ............................ ACCACCGCCGCGCTCGATACCGGCAGCGGTCC 1716073 28 100.0 32 ............................ AACGCAACACAGACTTGGCGCCCACCCCGTGC 1716133 28 100.0 32 ............................ GACACCAATCCGTCCATCAGGCTTTTGCCGAT 1716193 28 100.0 32 ............................ CGGAACACCAGGGCGACGCCGCTGCCGTTGAC 1716253 28 100.0 32 ............................ GTCGAGGCCGATCTGGCACAACAGGAGGCTAG 1716313 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 63 28 100.0 32 GTATTCCGCCGGGTAGGCGGTTTAGAAG # Left flank : GGCAAAACACTTGTATGCGAAGCTAGCGGCAACATACCGAATCAATAATTTTGCGCGTAACGAAGGCGCTGGAGAAACAGACAATAGTGCTGCGCGCGTCAATAGCTTCCTTGATCACGGTAACTATATTGCCTATGGGTATGCCGCAATGATACTTAATGCGCTAGGGATCAGTTTTTCGTTACCATTACTCCACGGCAAAACTCGCCGTGGGGCACTTGTTTTCGATATTGCAGATTTGATCAAAGACGCTTGGGTAATGCCGACGGCTTTTGCTGTTGGTGCAAACGAAAAATCGAAAGACCGGGACATGCGCGCTCAGCTTATTGAGAGTGTGCACGATTCAGGAGCGGTTGATGAGGTTTTCAGCTTCGTCAAGTCTCTTGCGCTAGAGCCCTCATAGAATCAATGGATTACGCGGGCGACTCGAAACGAAGGGTTGTTCCGCTGTGATTCGGTAAAGTGCTGATCTTGCAGTGTTTCAGGAGTATTTTTGTCGA # Right flank : GGTAGTAGCTACCGAGCGACGCGTTGACCGAACTCGAACTCCGGCTCGCGCTGGCCGGCCCAAAACAGCTCAAAAGCCATGTCTATTAGGCATGCGTGAAGGAAACTGAAGTCCATTCCGTTTCGCCCCGATTCTTTATCAAGCGTCCCGCTCCCCGCAGATGGGGGCGGTTCGCAGATCGCTCGTTTGTGGTGGACTGTTTTCCTTTATTGGATTGCCAGAGCGCGGAATCCGCTCCCGCTTCGTTCCCACTTGCGGAATGGTTGTGTCTCGCCGCGACGAAAGAGCAGAATGGTCGTTCCGTGCCTCGGCAGTGTGTAGCGCAGGTCCTTGCCTTGGGGCTCGGGCATGATGCTGTCCGTCACCTCGGTCCAGCCCGTCTCGTCGACGGCGAACCAGCGCAGGGTGTCGGTGGCGTAGGGGTCGCCGGTCGCGTTTCGCAGCTCTGGGTGCGTGGGGAGAATGTCCTGCTCCAGCACTTCCCATGTCTCCCTGCACTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCGCCGGGTAGGCGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTATCCGCCGCGTAGGCGGTTTAGAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1846185-1845425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH603170.1 Thiorhodovibrio sp. 970 Thi970scaffold_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1846184 37 100.0 35 ..................................... GCCCTGACCTTCACCGACGAAGCCCAAGCCATCAG 1846112 37 100.0 36 ..................................... GCCACACTTATTGCAGCCACCTGGTGATGGCCGGTG 1846039 37 100.0 36 ..................................... ATTTATTGCAAAGCTGCGGACGCTATCATCAGTTGC 1845966 37 100.0 35 ..................................... TGAGCGATCCCTGCGCGCGCACCAAAAGCGGCAAA 1845894 37 100.0 34 ..................................... CTTCCAGCGCGGAAGTAAACTTCTTGCTCTGCTT 1845823 37 100.0 35 ..................................... GCGGTAATGGCGCCATCGGGGAAGCATAGATGGCC 1845751 37 100.0 35 ..................................... ACGATAACTGTCTCGCAGTTTTGTCAGTGCCTGAA 1845679 37 100.0 35 ..................................... GCGGCCATGATCGCCGCAATCACGCACTAGGAGAG 1845607 37 100.0 35 ..................................... ATCAATTAAATCAGTAATATTTTTCTCTTTATCAA 1845535 37 100.0 37 ..................................... GGGTAAGAAAATATACTTGAGTATAATTTGCTTCTTT 1845461 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 100.0 35 GCATCGCCCGGCCAATTGGCCGGGCGCGGATTGAAAC # Left flank : TATTTTTGCTGCCGCTTGGAGTCGCAAAACCATGCTCATCATTGTGACCTACGACGTATCCACCGAAACATCCGCCGGTCGCCGGCGACTGCGCCGAGTCGCGAAAGTCTGCGAGCGCTATGGTCAACGCGTCCAAAAATCGGTGTTCGAATGCCAGGTCGACCAAATGCTTTATGAAGAAATCGAGCGCAAGCTCCTCGCCGAAATCGACCAGACCGAGGATAATCTGCGTTTCTATCGGCTGACCGAACCCCACGATCTGCGTATCAAGCAATATGGCCGCTTTCGTTCCACTGACTTCGAAGGTCCTCTGGTCGTCTGATGCGCGAACCCCAAGCAATTTCTTTTTTCTGGCACCTTCGCGCGCACCGCTATACGTTGATTTCCTTAATTTTTTCAACTTTTCTTCCGAAAGAACGAAAGAGAACGCTCCCCTTCCAAACCAAGTTCGCGCAAACTATCCGCCGCAACTTCTTAAAACAAGCGGTTGCATCAGCGGA # Right flank : ACGGTAGCGGACAGAACGCACATCCCGGGTGTTCATGATGCGCGAGATCCTGGAACTGGAGACCGATGCGATCTGCCATCGGCTTTCCGCGCGCCGCGATTCGCCTGCGCTCCGGTGGGGACTGAGCTGAAACTCTTCCAAATCCTCACCGGCATGGTGCTGGCGGCAGATGGGCGACCAGACTGGGTCGGCCGCCACCCTCGTGCAGCCGGATGCGGGTGATGCTTGCCGGCGGCACTTCCAGCAGCAGCAGGGAGGTATCGGCCAAGCCGAGGATTTCTCCCAGCAAGATACGAATCACACCGCCGTGGGTAATGATAAGCCTGTGGTGGCCAGTGTTTTGTGCCGAGTCGTTCTGGACCGGGTCGGCCTCGACCAATTCCCACCAGGCATCGGCCACACGGCGACGAAAGGCGGAAAATAGCTCGGCCTCCGGGGGATCAAACGCCTGCGGATCAGCCCAGAACGCCGACAAATCGGCGAGCGGAATCTCGCTGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCGGCCAATTGGCCGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATCGCCCGGCCCAACGGCCGGGCGCGGATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-19.40,-19.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //