Array 1 64896-64266 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWML01000001.1 Enterococcus thailandicus isolate LM52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 64895 36 100.0 30 .................................... AACAGTTGGGGTAGGAGATACTATTAAATA 64829 36 100.0 30 .................................... GCTAGGCGTGTCTGATATTTCTCAAGGGCA 64763 36 100.0 30 .................................... CGTTATGAGGTAACAGATACTATTCTAGAC 64697 36 100.0 30 .................................... TACAGACATTGCAGGCGGAGAAGCATTACT 64631 36 100.0 30 .................................... AGAATTAGATAATGTAGAAAGTATTTGTTA 64565 36 100.0 30 .................................... TGTGTCGTTGATAACATTTTCTTGAATGTG 64499 36 100.0 30 .................................... CCATGCAAACACTATGAAAACTCAAACTGT 64433 36 100.0 30 .................................... TAAAGTTTGTTTTCAACAATGGGGTTACAA 64367 36 100.0 30 .................................... TGCAGATAAATTTTTTACAGCTACTTTGGA 64301 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : CAGAAATCAAAACCAAAATTGATCGTTTGTCGATGGAAATTGCCAAAGTGATGCAACACGAATTGTTAGAACATGCGCTAGATCTTGAAGAAGATGAGTTGACCCTCATGGAGATATTTAAGTGCTTAGGAATACGGATTGAAACGAAAAGTGATACCATTTTAGAAAAAATGATTGAAGTAATCCAAGTATATCGTTATCTAGTGAAAAAGAAGCTATTGGTATTCGTGAATGCTTGTTCTTATTTAACCACGACAGAATTACAAACATTAATTGACCATATTTCTTTATACAATGTAGATGTATTATTTTTAGAACCTCGACCAATTGAGGGTGTTGCACAACAAATTCTAGACCAAGATTATTTTTTGACAAGAAGATAACAGATAGGACTAATTTTTTCGTTCTTTGACAAGTAAATCAAACCAATGAAGCATTCAGGCTAAAGCCTTGCTATGGGCGAATAGTGCGATTACGGAACCTCAAAAATTTGAGCCGAG # Right flank : GACTATTTTGAAAGTAGTTCATAATCCACTGTTTTAGAGCTATGCTGTTTGACGGACAAACTCATCTGTTTCTGAAAGCAAGCAGTATACATTCATACGATCAAATAAAAAAAGATGTAACAAATGGAAAAATAACAATGATTGAAGATGCAAAAAATTTTGAAGGAAATCCAGTGGTGAGGGTTATAGCACAAACAAGTAAAGAAGATGTCGGAAAGAGTGACACGCTAGGACGAAGCGATTTCCAGTTCCTAGGTGCTAATACTGAATGATTTACACCGCTACTTAGCAAATAGATAGGCAAAAAAAGTGTAAAGGAAGTATTTATGAAAAAGGTTGTTGTTACACTCATAATAATAACTATCCTTGTCGTAGGGTTTCTTTTCGTAGGCGCTAAACGTACAGAAAATCTACTACAAAATAAGGTTGAAAGTACCACTACAAGTGATGAAGAGGCAAATGACAGTTCAATCCAGTTCAAAATTATTGATTCAAATAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 45435-45734 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWML01000020.1 Enterococcus thailandicus isolate LM52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45435 36 100.0 30 .................................... TGTTGACTCGAAGCACCATTAATGATTGCT 45501 36 100.0 30 .................................... GATAGCTAAACGTAAGACTTCATATGTCTT 45567 36 100.0 30 .................................... TGTTAGTTGTAAGTTTTCTCTTGCAAGTAG 45633 36 100.0 30 .................................... CCTTTCATTTTTCCGATAATGTCATTTGCT 45699 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : TATATTTTTTCTTGTTGTGCGTATGACTAAAGCCAATAACACTGACAAAAAAGAAAATTGTTGCGACAGGTCTACCAAACCAGTCTAGCCAGTTAGGTGCGCCAAATGGAACAAACATCTGATGGATATGATCAATAAACATTAAGACAATGCCTAACATTTTTAAATCAAATGTTGATAGGCCTTTTTTGGGTGTATCAATCGTCAAAAATAATTCCTCCTAACTAATAATAACTATATGTTAACAATATGATTGATTGAAAGGCTAGTGAAATAATATAGAACGAGCGAACAATTTTGTCACAAGAGATTTTTTTGTTATCGATCATATACTGGTCTTTATGAGGAAAGAGTTGGGTAGTTGGGCTAGTGAATTCATGGTATACTAATAAAAAAGATCCTTGAAATCTAAATAAATAGATACCAATAGAAGCATCCAAACTGAAGCCTTGCTATGGGCAAATAGTGCGAGTACGGAACCTCAAAAATTTTGAGCCGAG # Right flank : CAATAGAAAAGAAGGTTTTTCAATGCTCTACCTGTGTATATTTAGGGTATACTCAAAATATACGATAATGTTCTATTTATTGATAATTATCTTCCTTAATTTTGAAATGGCAGAAATCGATATCAATGAGAGGATAGATTTTTTCTTAATCCTAAAAAAATTGAACAACAATTTCCGGAGTTTTTTAAAATCTCTGAGTTGTACTATTTGAAGGGAAAAATATGTTGGATACTAGAGAGTATGAGCTAAAGCTGCAGCAGCCGTAGATTTTCCTTGTAAAAAGGTTATTAAAGGTTTAAAAAGAACGCTTGAAAGAAATTGGAATACCAGTTCCAGAAATATATCAAGATAAAATAAAAAAGATGTAGCCGAACAAATGCTTTGAAGAGGGTATAAATCCTGAAGATTATTAGGCTATAAGATTATATAGTTAAATATTAAATGTTATTTTTTGTGAGTGTACATACTTAATAAACCTTGTTTTTTAGCGTGTTTAGGTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 78274-77775 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWML01000020.1 Enterococcus thailandicus isolate LM52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 78273 36 100.0 30 .................................... AAGATGTTGACGTGAAAGAATCAGAACGAG 78207 36 100.0 30 .................................... TCTAACACAGGCTTATATTAACCGTGAGAT 78141 36 100.0 30 .................................... TAGCGCACTTCATCAAAACATGGACTTAGA 78075 36 100.0 30 .................................... CGCACGGTCAAAGTATACTGCGAATGCACT 78009 36 100.0 30 .................................... AGAAAAAGATTACTCAAAACGGAATCACCG 77943 36 100.0 30 .................................... TTTTCTTTTGGACACGATTATGCTTGCCGG 77877 36 100.0 30 .................................... CAATAAATTTTGATTGTTTGTGTCCTCTAA 77811 36 88.9 0 ............................GG.T...T | A [77784] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.6 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : GAAGAACGATTTATGGATGAAGATGGACAAGTAATTGATGAGTATCGGATTGAATTTATTCGAGACCACTTAGCTTATCTTTGGAAAGCAATTGATGACGGCTGTAACATCAAAGGATATCATTTATGGACATTTATTGATTGTTGGTCATGGATCAATTCGTACAAAAATCGTTACGGACTAGTTTCCTTAGATCTACCTACTCAAAGAAGAACAATCAAAAAAAGTGGCGAATTTTATAAAAAACTAAGTGACGAAAATGGATTTAATTACGATATTGATTTGTTAGTTCTTTAAACAATTATATCCCTGTAGCTCAGACTCATTCAGCAACCAAAAACTGGTTATGACAGAAAGTCAGTTTATGCTATACTAAAGAAAACTGTTCGTTGACATTCAAATAGCCAACATATTACCAAATAAATAGAAAGAAGCATTCAAACTGAAGCCTTGCTATGGGCGAATAGTGCGATTACGGAGCCTCAAAAAATTTATCCGAG # Right flank : ATATGATAAAAAAGGACCGCCCATTGAGAGCTGGTCCTTTTTTTGTTAAATTTTTTGATCAATTTCAGTGACAGTTATTTGTAGCACACGGCTTAAGAACGGAAACTTTTCCTTCATTTCATTAAAAATTGGTCCCCCTGTGATAAACTCAGCGGTTCCGTGCAAATGGAATCCTGCACCAGGTCCTACTGTACCAATGACTTCTTTGCTTCCAACGGTTAACATCACTTGATTATTTTTTTCGATATCTTGTTGAACACTGTGCATCCCAGCTGCAGGAATATATAATTTATCGCCACTGATTTGAACATAGCTATTCCAAGTGTTCACAGCATGAAAGCCCGGAGCATTTTCACTCGAAGAAATTATTGTTACTGCTCCCTCATGTCTCATTACCTCTAAAAATGTTTCATTCATCATTTTGCAGACCTCATTTCAATTATCGTAAGTTTATTATAGCACCACTAAGTATTTCGTTCACTTTCTAGTAATAAAAAAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 36668-37167 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWML01000039.1 Enterococcus thailandicus isolate LM52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 36668 36 100.0 30 .................................... AGTCAGCCCATTATGTTTTAATTCGTAAGT 36734 36 100.0 30 .................................... TGCGCCTGCTCTTGTTGGATCGTTTTGTGT 36800 36 100.0 30 .................................... GCATGATACGAGTCGATTTGATATTTTTAA 36866 36 100.0 30 .................................... AGCCCGCTTCAATGCTTCTAGTTTCTTGTT 36932 36 100.0 31 .................................... CTGGGTCTTTGACTTCTTTATCTTTTTCGCT 36999 36 100.0 31 .................................... TTTTATAGAAATTGACTTGAGTGATTTATCG 37066 36 100.0 30 .................................... ACGTCCAGACGTCAAAAAGGCATATAACTA 37132 36 94.4 0 .........................A.......C.. | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 99.3 30 GTTTTAGAGCTATGTTGTTTAGAATGCTTCCAAAAC # Left flank : TGCAAATCCTTACTTGGCAATGGCCGTATTATTGCAAGCCGGTTTAGATGGTATCCGTCGTGAATTAACACCGCCAGATGCAGTTGACCGTAATATTTATGTGATGAATGAAGAAGAACGTGAAGCAGCGCAAATTCAAGATTTACCTTCAACGATTCACAACGCAATTAAAGAATTGCGTAAAGATGAAGTGATGATTGATGCACTAGGTCAACACATCTTCTCAAACTTTGTTGAAGCGAAACGTTTGGAATGGGCAGCTTTCCGTCAAACAGTTTCTGAGTGGGAAAGAGAACAATATTTAGAACTTTATTAAGTCAAAAAAGTAGTAAACACAGAGGCAATCTTTTGTCTCTGTGTTTTTTTCATCCATTATGTTTTGTTTCCCACAGGTTTATTTTCCCATGATATAATAAGAAAAAACAATTGTTGAAGTACTCTAACTGAAGTTTTGCTATGGACGAGTAGTGCGATTACGAAACCTTGAATTTTTTTGCGAG # Right flank : CCAACAAATTTTTTTGAAATCGCAATCATCAAATTGATGTCTTGACTTTCAATTCTGGAGCTTGTATTATACTCCTTGGGCACCCTTTTAAAGGGTCAGAAGTTTACAGAAATTTCAGCTCCCTATTCTTGTTAGAAGAATAGGGAGCTTTCTTTATTTTTTCTGGGACTTTTCCTGCAGATAAAACAAGAAGGAGTTTTTGAATTTATGACAAAATACATTTTTGTAACTGGCGGCGTTGTATCTTCGATTGGTAAAGGGATCGTAGCAGCTTCATTGGGTCGCTTGTTGAAAAATCGTGGCCTAAAGGTAACTATCCAAAAATTTGATCCGTATATCAATGTTGACCCAGGAACAATGAGTCCTTATCAACATGGAGAAGTATTTGTAACAGATGATGGTGCGGAAACAGACTTAGACTTAGGACACTATGAACGTTTTATCGACATCAATTTGAACAAATACTCCAATGTTACCACAGGAAAAATCTATTCTGAAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTAGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //