Array 1 23233-24519 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQFA01000039.1 Pasteurella multocida strain 2887PM isolate swab isolate 1 contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23233 28 100.0 32 ............................ TACTAAAAGACTCCTCCTCCTGTTAGTTACGT 23293 28 100.0 32 ............................ ATTTATTTAGATGATTTTTTGAGGGGCGGAGA 23353 28 100.0 32 ............................ AATAGATGAGCTGTTTGTAACGGAGTTTCAGA 23413 28 100.0 32 ............................ TTACAAAGCAGTTAAGTATTCAGAATCTTCAA 23473 28 100.0 32 ............................ GTTCTTTAAAGAATACAAGCTCAACTGTATGA 23533 28 100.0 32 ............................ TTTGAGTAGTAAATATTATGGAATTCATTCAG 23593 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 23653 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 23713 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 23773 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 23833 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 23893 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 23953 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 24013 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 24073 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 24133 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAACTAC 24193 28 100.0 32 ............................ TTTGCTACGAATTTCACATCCAAGATTCATAC 24253 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24313 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24373 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 24433 28 100.0 31 ............................ GTTGCTAAGAAACTAACGGATAAGCTTGCGA 24492 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 94914-91347 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQFA01000037.1 Pasteurella multocida strain 2887PM isolate swab isolate 1 contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 94913 28 100.0 32 ............................ ATTCAACAAGACTCAAGTACGCTTGTGGTGGG 94853 28 100.0 32 ............................ TGAGGAACTTGATGCAGCCCTTGATAAAAACT 94793 28 100.0 32 ............................ AATAAGAAAACACACCGTAACTACTGGGAAGA 94733 28 100.0 32 ............................ GTAAATGATGAAGGTTTGGGCAATACTGTTAA 94673 28 100.0 32 ............................ TTTATATGAACAAGCTAATGCGTGGCGTATTT 94613 28 100.0 32 ............................ ATTTGACTTTCTCTCAAAACAAGAGTAAATTT 94553 28 100.0 32 ............................ AGCTTAAATGCTGATATTCAGATGCACTTAAT 94493 28 100.0 32 ............................ TGAGTGTTTTTCAAGATACGCCTTGATACCCT 94433 28 100.0 32 ............................ TACATTGTTAAGTTAATTGCTTAACTTGTTGT 94373 28 100.0 32 ............................ ATTCGTAAGAGCTCGCACTAAATCAGCTATCA 94313 28 100.0 32 ............................ AACTAGGAGAACAAACATGAGAAGAATCATTA 94253 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTAAATG 94193 28 100.0 32 ............................ GTGCACTGTAAAATCATAATCTAGTTCGTAGT 94133 28 100.0 32 ............................ AACTAGGAGAACAAACATGAGAAGAATCATTA 94073 28 100.0 32 ............................ TTAATGGGTGTTGATGGTCGAAACTTTGAGTT 94013 28 100.0 32 ............................ AGCATTAAGTCAACATCTAGTTACTCATCTAG 93953 28 100.0 32 ............................ AATAGTCATCCTTTAGTCAACTCAAAGTCAAC 93893 28 100.0 32 ............................ AAACTTTTTCTCTTTTCTAGTCCAGAATGCTC 93833 28 100.0 32 ............................ TGATTCTTCGTCTGTATGTGCCTCTAATTCAT 93773 28 100.0 32 ............................ TTTAGTTTGACTTGTAAGCGACCAATTAACTT 93713 28 100.0 32 ............................ TTCCTGTTGTTCCTCTTGAGTATATACTTCTA 93653 28 100.0 32 ............................ GTACTTAGACGGGCTAGCTAACGAATCTTCCT 93593 28 100.0 32 ............................ GCTTGAACTAGAATACTCATAAGGTGGTCTTT 93533 28 100.0 32 ............................ CTTTTGTGTTCTCCCTAACTCTTTCATGTAAG 93473 28 100.0 32 ............................ TCAGCTGATTCCACTTCGATAATAAATAAGTT 93413 28 100.0 32 ............................ GCGATGAAGACGTGAAAGGTTTACTAGATACT 93353 28 100.0 32 ............................ CCAGTTCGACGTGCTGTGAACTTAGGGTTTCT 93293 28 100.0 32 ............................ TACGTGGAACTAATGAGATTGACAGTCGTAAG 93233 28 100.0 32 ............................ GCAATGTTACTAGCGAATCAGCTTATGGTTAC 93173 28 100.0 32 ............................ ATTGAGATAAGGGGTCGTTAGGCATCACACCT 93113 28 100.0 32 ............................ AACAATGAATGCGTTCTTACGCTGATTCATCT 93053 28 100.0 32 ............................ AGTGACATACTACCCCCTACAACTTCTTCTTC 92993 28 100.0 32 ............................ GTATGAAGAAAGAAGACTTATGGGGTCTAGTT 92933 28 100.0 32 ............................ AAATTGTTAAGAACGTTATAAGCGTCTGTTTG 92873 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 92813 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 92753 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 92693 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 92633 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 92573 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 92513 28 100.0 32 ............................ TGTTGTTCACTGGCACAATAGTAATGGTTCAT 92453 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 92393 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92333 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92273 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92213 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92153 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92093 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92033 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 91973 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 91913 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 91853 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 91793 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 91733 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91673 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91613 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91553 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91493 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91433 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91373 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 60 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //