Array 1 1299-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCSN01000033.1 Lacticaseibacillus paracasei strain DPC2071 DPC2071_Contig33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1298 36 100.0 30 .................................... GCAGTGTGACATCAGGAACTTCGCTACTAT 1232 36 100.0 30 .................................... CATCAGTCGGATATATGTTTGCACGTCTAT 1166 36 100.0 30 .................................... GTTGTTTACCTTTCATGCTGATACCTGTGT 1100 36 100.0 30 .................................... AATTCAAAATGGTGGAAGGAAACGACTTAG 1034 36 100.0 30 .................................... AGAATAGACTTCGAGGTATGCAGATCAATG 968 36 100.0 30 .................................... TTACAAAATTGTTGAACTGCGCCAAGTTCT 902 36 100.0 30 .................................... AGCGCCATGTACAATGAACTTGTAAGATAA 836 36 100.0 30 .................................... TTTTCAGATTCCTGAGCCGATCGCAAATCG 770 36 100.0 30 .................................... AGCTAAACCCCGGAAGTCCCGATGTGGCTG 704 36 100.0 30 .................................... CTTCTTTTGCGCATACTCGGCACCGTCATG 638 36 97.2 30 ................................A... AAACGGCGACTTTATTAACGTTGATCACAT 572 36 100.0 30 .................................... TTTTCAGATTCCTGAGCCGATCGCAAATCG 506 36 100.0 30 .................................... AGCTAAACCCCGGAAGTCCCGATGTGGCTG 440 36 100.0 30 .................................... CNACTATTTCTAAGCATTGTTCCTAGTTGG 374 36 100.0 30 .................................... ACGATGACAACCTTGAACTGTATTACTCAG 308 36 100.0 30 .................................... AAAATCAACTCAGAAACAGGCACATCATCA 242 36 100.0 30 .................................... CTGCTGCCATTAATGGCGGGTAATATTTGC 176 36 100.0 30 .................................... TTCAACATCATGGGCGTTGCACGTACAACC 110 36 97.2 0 ...................C................ - Deletion [75] 74 35 75.0 0 -CAAA.....AT....A.G................. | Deletion [74] ========== ====== ====== ====== ==================================== ============================== ================== 20 36 98.5 28 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCAATGGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTCGACGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGACTGAGATTTCTCTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG # Right flank : CAGGAAATTCGAGTTCTTCCCGCAATTGATGCTCTCAGGT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 139403-137352 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCSN01000027.1 Lacticaseibacillus paracasei strain DPC2071 DPC2071_Contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 139402 36 100.0 30 .................................... GCAGTGTGACATCAGGAACTTCGCTACTAT 139336 36 100.0 30 .................................... CATCAGTCGGATATATGTTTGCACGTCTAT 139270 36 100.0 30 .................................... TTACAAAATTGTTGAACTGCGCCAAGTTCT 139204 36 100.0 30 .................................... AGCGCCATGTACAATGAACTTGTAAGATAA 139138 36 100.0 30 .................................... TTTTCAGATTCCTGAGCCGATCGCAAATCG 139072 36 100.0 30 .................................... AGCTAAACCCCGGAAGTCCCGATGTGGCTG 139006 36 100.0 30 .................................... CTTCTTTTGCGCATACTCGGCACCGTCATG 138940 36 97.2 30 ................................A... AAACGGCGACTTTATTAACGTTGATCACAT 138874 36 100.0 30 .................................... GGAGGCCGGTCAGTGGATCAGTCACGACTT 138808 36 100.0 30 .................................... AACGGCAAAAGCGTGAGGCTGAGCAAGCTA 138742 36 100.0 30 .................................... TGCATTTTTACTTTTTCACGTTGCACTAGG 138676 36 100.0 30 .................................... GGTGGCGCTGGAAACTGGATAAACCATTAT 138610 36 100.0 30 .................................... AAAGACTTGCAAGGCGTTCAGCGCTTGCTG 138544 36 100.0 30 .................................... GATTCTCTTCGCCAGTTCTGTGTAGCTTTC 138478 36 100.0 30 .................................... TCAATCTAAAGACATAAATGTTATCATCAA 138412 36 100.0 30 .................................... AGAACAAGTACCGATCGAAAAGGGTATTGG 138346 36 100.0 30 .................................... ACGCGGCCCGCTATCTGGTTTACAACTTCG 138280 36 100.0 30 .................................... CCACTATTTCTAAGCATTGTTCCTAGTTGG 138214 36 100.0 30 .................................... ACGATGACAACCTTGAACTGTATTACTCAG 138148 36 100.0 30 .................................... GTCAGGATGATCTCGTAGTGATGCCGGTGG 138082 36 100.0 30 .................................... GAACGAAAGACAGGTGATCAGGATGGCGGT 138016 36 100.0 30 .................................... TCACAATTGTTGGCCTATTGCCGAAGTATA 137950 36 100.0 30 .................................... CCAAAATATCTGGAATATTGCGTGCCACTT 137884 36 100.0 30 .................................... TTGTTTCCGGTGTTCCGATTGAGTATTTGA 137818 36 100.0 30 .................................... AATCGCATGAGAGCGTCATTGCGGATTGTG 137752 36 100.0 30 .................................... GCTGTGTTGTCATACGTGTAACCAGTGCCA 137686 36 100.0 30 .................................... AAAATCAACTCAGAAACAGGCACATCATCA 137620 36 100.0 30 .................................... CTGCTGCCATTAATGGCGGGTAATATTTGC 137554 36 100.0 30 .................................... TTCAACATCATGGGCGTTGCACGTACAACC 137488 36 97.2 0 ...................C................ - Deletion [137453] 137452 35 75.0 30 -CAAA.....AT....A.G................. AGGAAATTCGAGTTCTTCCCGCAATTGATG 137387 36 86.1 0 C............................G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 98.6 29 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AAATACTGCAACGTTCATTTCGACGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGACTGAGATTTCTCTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACC # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCCACCTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGTAGTACGACCAGTCAGACGAGTAACGCTAAGGTGAAGATCAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCTGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAAGC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //