Array 1 55817-59682 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXSB01000001.1 Clostridium sp. Bc-iso-3 Bc-iso-3_contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 55817 37 100.0 38 ..................................... AATGGCTTGTAATCTCCATTGCTACAATCACACAATGG 55892 37 100.0 36 ..................................... TTATCAACTGATTTGTCTTTCTTTTCATCGGCATGA 55965 37 100.0 37 ..................................... AAACGGTTATCAACTATGAGAATGAAAACGGAACCGA 56039 37 100.0 43 ..................................... AGCCTTTCGCATACTCAGGAGCATATTTTGGATTATCAAAACG 56119 37 100.0 36 ..................................... TTATATAAATAAATAATATGAGAAGGTGATTAATAT 56192 37 100.0 37 ..................................... TGAATTAAGAAGAAAACATATTACTGAAAAGCCTAAA 56266 37 100.0 36 ..................................... TCCACTTCAACTTTTGTAAAATATTCTTCCAGATTA 56339 37 100.0 36 ..................................... ATATTTTTCCCTTTTGTATTGGGCTCATATTGTCCG 56412 37 100.0 37 ..................................... TACATAATAGAACCTCCTTAAAATTCAATCAGTAATT 56486 37 100.0 36 ..................................... TTTCTAAGCTCTTGTAGGTATTCTCTCAACTTTGCG 56559 37 100.0 34 ..................................... GAATACAAAACTTTTTCTGATGAAGATGCAGAAA 56630 37 100.0 36 ..................................... ATCTCTATTTCCAAATCTAGTGATGGTATAAAGAAA 56703 37 100.0 35 ..................................... CCCTTCAAGATACTGAATCAATCTGTCTGCGTCAA 56775 37 100.0 36 ..................................... TTCTCACCAAACAAATTCTTCGTTGTATTTCTCGAA 56848 37 100.0 36 ..................................... TTCTCACCAAACAAATTCTTCGTTGTATTTCTCGAA 56921 37 100.0 37 ..................................... AAAGAATGTATATTATTTTGCAGGGTTTAAAACTTTA 56995 37 100.0 38 ..................................... TTGTTGCTGGCGTATTCCACAAGTCAGGGAAAACTGAA 57070 37 100.0 38 ..................................... ATGTCAGAGCCCTTCACATAGTCAATTACCCTGTAATA 57145 37 100.0 38 ..................................... TAAAGTGCTCTGTTGCTGTGTTGAATTCGCTTAAATTG 57220 37 100.0 36 ..................................... TGAATACCACTAGCTATGAGTAGATAAAAATACCTC 57293 37 100.0 37 ..................................... AGTTAACACACATTTTAAAACCCTCCAATTTGATTTA 57367 37 100.0 37 ..................................... AGCCTTGTGCCTGTAGCATTACAATCCATAAAAGATA 57441 37 100.0 39 ..................................... TCTCCTGCTGTTGTAATGCCTATCATCAGCTTATTTGTG 57517 37 100.0 36 ..................................... AATACGCCCAGCTTTGACAATAATTCTATCTGTTCC 57590 37 100.0 35 ..................................... TTCTCATTCTGGCCAAATTTGAAGGTATGCCTTGG 57662 37 100.0 36 ..................................... ATTTTTCATTCGCTTCTTGCACTTTCCCGAGTTCAT 57735 37 100.0 37 ..................................... CTATTGGAGCAGATATGAATTCTAGAAAGTCATTTCC 57809 37 100.0 36 ..................................... CTGATGATGAGGACGCAAAGTTGAGAGAATACCTAC 57882 37 100.0 37 ..................................... GATGAAGTACATCTAAACAAGAAAATGCGGTGTGTGT 57956 37 100.0 35 ..................................... CCTAGTGCTCGGCAACCAATTATGTTGCCTTGTGA 58028 37 100.0 37 ..................................... GTATTTTTGCTATTTCTTTTTGCTTTCCTATTAGGTT 58102 37 100.0 36 ..................................... AACAGGTAGCTAAAACAAGTAGGGAAGTAGCTGGTA 58175 37 100.0 37 ..................................... AAAAAAAGTAGGGGAAATAGCTCCCTATAATTCACAT 58249 37 100.0 36 ..................................... AACAGGTAGCTAAAACAAGTAGGGAAGTAGCTGGTA 58322 37 100.0 37 ..................................... AAAAAAAGTAGGGGAAATAGCTCCCTATAATTCACAT 58396 37 100.0 36 ..................................... TTTCAAGCCTATTAAGTATATCAAGGATATCCTTGA 58469 37 100.0 37 ..................................... CCCAATCTTGTCCGAATAGACAAGATTTGGTGATACC 58543 37 100.0 37 ..................................... AAATTTTCTTCCAACGTACAAAAACGCTTTTCTATTC 58617 37 100.0 35 ..................................... ATATGGAACATGAGAGTATATTGTTTCATGTCAAC 58689 37 100.0 35 ..................................... GATTATCTGCAGTTCGTCTCCTGCGAATGGAACCG 58761 37 100.0 36 ..................................... AATAAAACCAATAATTGTTCATCAGACAAAAAAATC 58834 37 100.0 37 ..................................... TAACCGGTGATACAGAATTATCAACGTAGTTATTATT 58908 37 100.0 37 ..................................... AATAACTAAATACCAAGAGTGCTTGTGTCAGTGCCTC 58982 37 100.0 37 ..................................... AGGAAACAGGATGCGACTGGTTCCTCAGATGTATCGG 59056 37 100.0 37 ..................................... AGGAAACAGGATGCGACTGGTTCCTCAGATGTATCGG 59130 37 100.0 36 ..................................... GTTTCCATATGCCATAGTAAAGACATGGCAGAGGAA 59203 37 100.0 36 ..................................... GATTTAGTTCATTAAAATCTAAACCAACATTTTCTT 59276 37 100.0 38 ..................................... TTTTTTACTCCAAGCAGATCCGCAAGTTGTTTTTGGGT 59351 37 100.0 38 ..................................... GCGATTCCGAGCATAGCAGCTTCACTCATTTTTACCTC 59426 37 100.0 37 ..................................... ATGTTTTTTCTTCATCAGCAGACGAATTTCTGAAACA 59500 37 100.0 37 ..................................... GGCTGATAAAGAACCCACCATGAAGCTGATGACACTA 59574 37 97.3 36 .........A........................... TTCTCCAGCCGATTGTACCCAAGGCAACTTCCGCAC 59647 35 81.1 0 ..................--......G....A.C.CG | A [59675] ========== ====== ====== ====== ===================================== =========================================== ================== 53 37 99.6 37 GTTGAAGTAGGACTTCCAGTAAAACAAGGATTGAAAC # Left flank : GTAGTAGTTCTCGGAACTGGCTTTGGAGACAAGGTTAGCCTTGTGGTAATGGCAACGAAGGATGTTGTAGCAAAGGGCGTTCATGCAGGGAATATAATTAAAGAAGCTGCCAAGGTTGCCGGAGGCGGTGGCGGCGGACGTCCGGACATGGCACAGGCAGGAGGAAAGGACGTATCTAAGATTGACGAGGCTTTAAAACAGGCTGTCAAGGTAATAGAATCGCAAATTGCAGGTTAGTGTGTTGAAAGAATGGTTAATTTATGATATATTTTAGTTGTAGTTTGAGTTATTAGTGGTAAAATGTGGATGAAAAATTATTGAGAAATTTGAGTTGATAGGCTTGAAGACGTTGGGAATACTGGGTTGTATGCCTATGTTGGTAACTCAAAAATGTGTGATTTTTGATGAAAAAGGGGCATTTTTTGATGGGAAGTGAGCAAAAAAGTCTCGTCAAAAAATGCTCGTAAGGCTTGAAAGTTGCGGGATATGGCTTCGAATGC # Right flank : GAAATAATTGCAAATATATTGCAAATACAACACAAACTACAATGTAAAACCCGTCAAAAAATGCTGCAAAACAACAAGTTTTGTCGAAAAAAGTTACAAATATTGACACTCCATATTATATAATATACAATGGTGCTATAAAATTTTGCTGCTGTGAAAGAGGGTGACTGCTTGCTTGCAGGTGTATTGCAGTTGGGACAGTATGTAATCAATAACAGAGGCACTGACACTGAAGAGTATCTTCAAGTTATTGAGAACCCTAATGACAAAGGCAATTACAATCATGTCTTAAAGATTGCATTTGATTTTGCAAAAGATAATGTAACCTACCGTGGCATTGAGTATGAAGAATTTTCATTAGGGAAAATAAATAAGTACGCATATAAAAAGGGGAGTGCAAGAGGCGGTGATATAACACCTACGTCAAAGTATACAGATCCAATAAAAACTCTAAACAAGATAACGATATCATTTAATGATGTCTTAAAAACTACAAATCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGTAGGACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 3334533-3333068 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXSB01000001.1 Clostridium sp. Bc-iso-3 Bc-iso-3_contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3334532 29 100.0 38 ............................. ATGGCTTTCGCTCTTTCAATCTCTGCAGCCATGCCTGA 3334465 29 100.0 37 ............................. TGTTGATGACAGCAATATGAAACTGCTCGAACTTTCA 3334399 29 100.0 35 ............................. ATAAAATAGCCCAATATTTCGGTGTGTCATTAGGT 3334335 29 100.0 39 ............................. AATTTTATGGACTTAATATATCGCAAGTTTCCAATCCAA 3334267 29 100.0 36 ............................. GTATATCAAGGCTGGATTCAAAACTTGGTTTCATTA 3334202 29 100.0 35 ............................. ATAACATAGTGTTCATGCCCTCTAACGGCAACCGC 3334138 29 100.0 35 ............................. TGGTATTAGCATACACTTCAGACCGCTTTGACGAG 3334074 29 100.0 35 ............................. GCGTATTGTTGACTACGTCTTGCGTCATATCCGTA 3334010 29 100.0 36 ............................. CTTTACGTGCCGTTCGCTATATCCAACTTCCTTTCC 3333945 29 100.0 38 ............................. ATAATCGTTAATATACTTTGTTTCATTTGATATTCTCC 3333878 29 100.0 37 ............................. GGATGATTATAGTTTAGCAGGGATTGAAACGAATGTC 3333812 29 100.0 35 ............................. TTTTTTCAATCGCTTGTTTTGCTTCCGCAACCTTC 3333748 29 100.0 35 ............................. GCGCCAAAAGGGAAATGGCATGGGCTGTATATCGA 3333684 29 100.0 35 ............................. TTGCATTGCTCAGGTCTGCGCCTCTCAGGTTTGCA 3333620 29 100.0 36 ............................. TGACGTATAAAAATCATGCAGCCTATTTTCTTCAAT 3333555 29 100.0 36 ............................. ATAAGTCCGGCATTTTCAATTATACTTATGAGCTCG 3333490 29 100.0 37 ............................. ACTGGTAATGGTAGTTTATGCCTTCTTTTTTATTTTG 3333424 29 100.0 35 ............................. ACCTTCTGATAAGGTAAGGAAAAAGACAGAAAACG 3333360 29 100.0 37 ............................. GTGTGAAATTGATATTCGGGAAATACTGGAACGTATC 3333294 29 100.0 36 ............................. GGGAAACATTGGACGCAAGAAGAGGTTGAATTTTTG 3333229 29 100.0 37 ............................. TTACAAAGATATGATTATTTTCCTCTGGAGTTTTATT 3333163 29 100.0 38 ............................. TTTTTGGCAGAGGACGATGTTCTTAAACTGCTACGAAG 3333096 29 86.2 0 .................C..A.CA..... | ========== ====== ====== ====== ============================= ======================================= ================== 23 29 99.4 36 GTATTGCCTTAACTATGTGGGATGTAAAG # Left flank : CATGAGGGTGTTCACAGGAGGAACAGATAATTCTGGTTATGTCTATTATATGGTTGGCAGGAGCATTGTTTTCAAATCCAACCAAATATCTGGAATATGAGTCGTGGTATGTCCAATTTGGATTTTTTGCACCACAAAAAGGACAGGGAAGTTTTATAAATGGTAGCTTTTTAGAAGAAAATTCTTTCATCGACTCTAAAAACAATTCTTTGATGGATAATTTATTAAAATTTAGCTTGCAAAATATTGAAAATAATCTTATCATAATCTTGTGGGTGTGCTTTTCTAAGCATATTAGCAGGAGAAAGAGTGTTAAGTGGCCAAGCAAAACTGACTCTTTCTCTTTTTATATTATGATAATATACTTTTGGGATTTGGCAATAGATCAGATGGTATTTTGATGTATTTTTCAGCAGATTATTTTCTTGATTTATAGGTAAAAGTAATTTTAATTTGACGCTTTAGCAATCTAACAGGGAAAAACAATTTGTCGCTCTACA # Right flank : ACAGACTGCCCAAAGGAATGGTAACATGGACAGCCAGAGCCTAAACAGCTTCAACTTAATATACTGCTCACAAGGTATGCTAACGCCTTCGTAGCTCCTGCTGTGAAAAAGCTAAATGTCAAATCTCCCCCTTCTCCACAAAAACAGTAAAGGTACCATCCTCATTATTCACAACATCAAGTACTTTATGCCCCTCTTCCTTGAGGCTTCTTGGCACATTCAAAATAGGTTCTCCCTCATTCATCTTAATTTCAAGAATTTGCCCTTCCATAAGTTCCTCTATGGCAATTTTTGCCTTAACAAAAGTCATGGGGCAAACAACATCAGTGATATCTACAAAACCATTTGCTTTAAAATCGCTCATATCCATCCCTCCATTTCAAGCGGTTCTTGTATCCACATAAAATGCTCAATAATCACACCGCTTCCAACAATTCAACAAGCCTATCTTCTAACAAGCCCCAACCCACTCTGTCCAATGTATTTCCAAATCTTTCACC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGCCTTAACTATGTGGGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 3340488-3339806 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXSB01000001.1 Clostridium sp. Bc-iso-3 Bc-iso-3_contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3340487 29 100.0 36 ............................. TTGTATGATTGGAACTTCCATGACATTTGGAAGTAC 3340422 29 100.0 36 ............................. GTAAAACTGTTTCTATGGTTGAATATTTAGAACGTA 3340357 29 100.0 38 ............................. TTCAGGTTTTCTCCGTCTATTGTTACTTGGTTTATTCC 3340290 29 100.0 36 ............................. GTTGGCTTAGGTTCTAATACATGCATAATCGAAATG 3340225 29 100.0 37 ............................. TCAAGCCCGTCCCAAATATCCCACCAAGCAGGTTCAT 3340159 29 100.0 36 ............................. AGTAAAGTACGACATTCTACAACATCAAAGCATTGT 3340094 29 100.0 36 ............................. GAGAATTGCGAACACAAGGAACCGGCGATAATAAAA 3340029 29 100.0 36 ............................. AGACTTGACTATATGGACGAAGAATATATCATCGAA 3339964 29 100.0 35 ............................. GCCAAAAAACTTCAAGAGTTGGGTTGAATACAGAG 3339900 29 100.0 37 ............................. AGAAAAATTAAGTTGAACACTATTCCAGTTGAAATAT 3339834 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 100.0 36 GTATTGCCTTAACTATGTGGGATGTAAAG # Left flank : GAAGGATTGCATCGACAGTATCGCAAAGTCACAAAAACGAAAACGATGTTTCCAAGTGATAACTCACTAGAAAAGATGCTGTATTTGGCATCAATGAATGTGGTAAAGAAGTGGACACAACGGTATAAGGACTGGGATAGGGTACTCAGCCAACTAATGATTCAGTATCCGGGTAGATTAGAGAACTACATTTAAAAGCATTCACCCCCACCGCCCTCAAGGGCTCGTCCTCATCGCCGGACGGGCTAGACCTCACAAAATTAAAAGCGGTGAGAAAAAGGACAGAATACCCTATTATAATCAATTATGGCCAAATTGAATCAAATTTATGTATAAAACTCGGCAAAACTGGCAATAATATATAATGAAGAAATGATTTAAGGTAACATTCTGTAAACTTCAAAAATTCAAAATTTCTTGCTAAGGAGGATTGTAAAAATTCCGATACACAAAATTATTTACATTACCTTGTTGGACGCAATCAACTTCAGGAATGCAGA # Right flank : GGAAGAAGCTGAACCGGATCAATGAAATGGCTGGCGTATTGCTGTAGTTCAGCACTTTAAAATCGGAGCAAAAATCAAATTAAAATTCTCTTAATACCAGTGAAAACAGCAAAATAAAATTCTATACGCATAATACTACCGGAAAAAAAGCAAATAAAAAGCAGGTCAATGACCTGCGAAATCAAAATTCTGGGTAGTCCAGTTCCTTGTATAAATGTAGCAACGCATATGCAACAGTAGCGCCGTCAACAACACCGAGAACAGTAGTAAGCCTTTCTTAATTCCAAAAAATATCATTAAAATTTACCAAATGGCAGCCGACGTTAAAATCCGGCATGCAGGCAAAATATCCTCTTGAGGTTTTGCCGAAAATGACCATAATACTTGAGCGGCTTTGGATCATAAATTCATAATGCGTACCATAGTCTTTAAAGTTTGATATTTTGCCGGGCCAGTACTTTTTTTGTGGTTACATATAAAAGTATTCATCGATTTTACCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGCCTTAACTATGTGGGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 3347718-3342111 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXSB01000001.1 Clostridium sp. Bc-iso-3 Bc-iso-3_contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 3347717 29 100.0 35 ............................. CTTCAATAGAATAAGCAGGTTCGATTCCTGCATGG 3347653 29 100.0 36 ............................. AAGAATTCAAAGATATAAACAATAACAGAGGCTTCA 3347588 29 100.0 36 ............................. AGCGAGGATTTAATCCTCACAAGGCTATAAAAGAAA 3347523 29 100.0 35 ............................. TATGATTTCTGTTTGGATGTAACTTTGTGCCGAAG 3347459 29 100.0 37 ............................. TTCCGGGCCGAGGTCAAGCATGGCCTTACACACCGGA 3347393 29 100.0 37 ............................. ACGCAGTCAATCAAGATAAGCTTCTCTTTGTCCGGAT 3347327 29 100.0 38 ............................. CAGATTGCGAGAACGTTCGACTAAATGTAAAATCCTCC 3347260 29 100.0 36 ............................. GATGTAAGGTAGACAGACAAGAAATTGACAGCATTA 3347195 29 100.0 37 ............................. TTGGTGACTTTGCCGTACTGTTTTTTGACTGTGTTTC 3347129 29 100.0 36 ............................. TAGTCTTTTTCTTCAGCTTGCACTTTCAATATCTTG 3347064 29 100.0 36 ............................. GTCACAAAAACAAGGCTCGGAGAAGTGGAAGGTCTT 3346999 29 100.0 36 ............................. CCAGAAATGGGGGCATACTCCAATAGTTGTGACCCC 3346934 29 100.0 35 ............................. GTCACGTAATGAAGCATAGTCAATACCAACCGTGC 3346870 29 100.0 35 ............................. TTGCTCTTTTCGCTTGCCATCTCAATTCCAACTGG 3346806 29 100.0 36 ............................. CTTTGACGGCTATATGTGCGTTTTGGAGGGGCATTG 3346741 29 100.0 37 ............................. ACATGAATGGTTCATTTTGCCCCCAGGCTGTAAGTCC 3346675 29 100.0 37 ............................. TGCCGGCATTTTTACAATGTTTGAGATTTTCAGCTTG 3346609 29 100.0 36 ............................. ACCTCTGGATTGCCCCATACTGACATAGCAGCCATA 3346544 29 100.0 37 ............................. GTAGTTGAAGACAATGTTAATATCTCATCCGCTGCCT 3346478 29 100.0 36 ............................. TCAAAATCGATTTTAATTAGCTTTTCTATAACAGGA 3346413 29 100.0 36 ............................. TGTTGAAAGATTTTATTTCTTTCTACATGAAGCACA 3346348 29 100.0 36 ............................. GTTGGATTTGCAAACATTACCTCGATACCATACTGC 3346283 29 100.0 37 ............................. TTTCCTTCTCCGCCTCTTCAGCCCTCTTCTTAGCTTC 3346217 29 100.0 37 ............................. GTTGCAACGTCTGTGAGTGTTGCTTTTGCCTTGATGT 3346151 29 100.0 35 ............................. TTTTCTTTTCTCCTTCAACCAGGGTTCTTCTGGCC 3346087 29 100.0 35 ............................. TAGCTTCTTCCCAACCATAACATACCGTCACATAA 3346023 29 100.0 36 ............................. GCGGCCCCGGCTGGCACAAGCCGCTGGACCAGGCTG 3345958 29 100.0 37 ............................. TCTCTGTTAATGTGAACGGTGAATCTAATAGAATCGC 3345892 29 100.0 35 ............................. ATTAGCCCGTTATCAACTTGTTCGACTGCAATTTC 3345828 29 100.0 35 ............................. TTCTTTAAGCACATTTGGGCTACCAACGATTTTCT 3345764 29 100.0 37 ............................. TGTTTTAGTGGATGATTATAGTTTAGCAAAGATTGAA 3345698 29 100.0 36 ............................. AAATTTGGGTCAATCGGTAAATCTAAAGTAGCAGCA 3345633 29 100.0 36 ............................. ATTTAGGATATCTTCGTTGCTCCACGAAATTTCAAG 3345568 29 100.0 36 ............................. TTCTTTCGATAAACTTCTTATATTTCCTCCGGCATT 3345503 29 100.0 35 ............................. AAGCAAGCTCAGAGGATGTGACTCTGAGCCCTGAA 3345439 29 100.0 34 ............................. TCTTTCAGAACTTCTTCCGCGCTTTCATATGCAG 3345376 29 100.0 36 ............................. CAAAAATGACTAGGGCAAAAAAGAAAAGCCTCAAGA 3345311 29 100.0 35 ............................. ACTTTAGTCGAATGGCTTAAAAACAATCAGCATAA 3345247 29 100.0 35 ............................. AGTTGTAGATGAATACGGACAAATTCAGGAAACCG 3345183 29 100.0 36 ............................. GAATAGTCGTTGCCCACAATGTTTGCAGTACCATTC 3345118 29 100.0 36 ............................. ACAAGGAAGGCTTGGGAATGTGGTTCCTCCCATCCT 3345053 29 100.0 37 ............................. AGAATAAGGATAAAGCAAAGATGTTATTTTTCTTCGA 3344987 29 100.0 36 ............................. GTCAAATATCATTCTGACAACTTGTGCAGCTTCTTC 3344922 29 100.0 36 ............................. TCTGCTATCTGCATATATAAACCTACAGCAGATGCA 3344857 29 100.0 40 ............................. TTATTATCAGCCATTTGAGGATTAATCAGCAGATTATCAA 3344788 29 100.0 35 ............................. CCATACTCAAAGTTATATTTTTTTAACTCTTCTAC 3344724 29 100.0 36 ............................. CCTTTTTGTTATTTCCACTGTATAAAATGGCGTTTT 3344659 29 100.0 36 ............................. GTGCAAAAGTTGCCTTGATTATAATCACCACTGTTG 3344594 29 100.0 36 ............................. GCACAAGACAACTTCACGCCGGTTGCCCCGTGGGAA 3344529 29 100.0 35 ............................. ATAACGTGTTCGGCTTGTTTCTTCATAGACGCCGC 3344465 29 100.0 35 ............................. GAACTTTGTTTTAGGTCGGGTTCGTCGTCTCCCCA 3344401 29 100.0 37 ............................. TAAACATAAGTTGTATTGCGGTAAGCAACATATCCTC 3344335 29 100.0 35 ............................. GTGCTTGGTAGATTCCATTCCAGGATTCTAACGCC 3344271 29 100.0 11 ............................. TTATAACTTGA Deletion [3344232] 3344231 29 100.0 36 ............................. GGCTATATCAGGTATAGCATTTATCCCTGCATCTAG 3344166 29 100.0 37 ............................. CATAAGCTGGCATTAGATATACAGTCGTGAGAATAAA 3344100 29 100.0 37 ............................. TTCACCTGTTAGAGAGGGAGATTTTAGAGTGTCTGAA 3344034 29 100.0 37 ............................. TCTAAATTCTGCTGTAAGTTCGCTGTCAAATGTTTCT 3343968 29 100.0 36 ............................. GTTGGTGATTACACTCCAGGGACTGCCCGTGGTTGG 3343903 29 100.0 38 ............................. TTTTCAGCAGCAATCACACGAGTTCCAATTTCACAAGC 3343836 29 100.0 37 ............................. GATCAAAAATCAAATATATCATAAGAGAAAATATCAA 3343770 29 100.0 35 ............................. CATATTGTATTGCTCAGAAGTTACATAGTAAGGAA 3343706 29 100.0 36 ............................. GAGTTAAACGGAAAATGGAACAATAAAGCAGACTTC 3343641 29 100.0 37 ............................. ATCGATAGAAAAATCTCATAAAACGCTCCGCTAGTAA 3343575 29 100.0 37 ............................. CCTTTTGAGAGGAAGATGTAGCTGAAGCTTCTGCTGG 3343509 29 100.0 36 ............................. AACAAAAAGGTATCACAGTAGCTCTTACCCCAAAAC 3343444 29 100.0 36 ............................. GAACTTTCTTTTACAATAGATACTCTCGTATCATCT 3343379 29 100.0 36 ............................. ATTCTGCAGTCAACACAAAAGTATTCTATAGACACA 3343314 29 100.0 35 ............................. ATACTTGCTGGTATAGAGAATATAGGGCTTTTAAA 3343250 29 100.0 36 ............................. ATTGGTGTAAGTATCATGGCTGTCATGATTGGGGTA 3343185 29 100.0 38 ............................. GTATTTATTCTACATCGGGTTTAAATTTTCGGATGGAC 3343118 29 100.0 38 ............................. ATCAGTAAACAGCATGACAAACACAGTCAGCTCAGCGC 3343051 29 100.0 35 ............................. TACTGAAACAAATATACTGACTTTCATGTAGTAGA 3342987 29 100.0 37 ............................. GAGCAAAGGAAAGCAGAAGCTGAAACATTAGCAAAAC 3342921 29 100.0 35 ............................. CCGCACAAACCACATTCTGTTGTTCCGTTGTCTTC 3342857 29 100.0 35 ............................. TTGTGTATAGCACTGTAAATGCGGTCGCGCCCTAC 3342793 29 100.0 38 ............................. TGATAAAAATAGTTTGAAACGTTTCAATCCTTATTTTC 3342726 29 100.0 36 ............................. AAAGGATCATAGACATGACCGGATTTGTTGCAAATG 3342661 29 100.0 35 ............................. AAAAATAATTTTTCTTGGCAATATTTAGAATCTTC 3342597 29 100.0 37 ............................. ATAGCCGACTTTAATTGAGGGGGTAAATATGCATAAT 3342531 29 100.0 36 ............................. AACATTTGAGAGGACTTGGGATGCTTTGAATAGAGA 3342466 29 100.0 38 ............................. TCGTGTGGCAAAGCAAAATTATATTTGCGCTCGCGGGT 3342399 29 100.0 36 ............................. AGAAAAACTATATTGTTATTGGACGAAATTCAGAAT 3342334 29 100.0 35 ............................. TAAATAAAATTTCGTCACGAGGAACAGGAGCATTA 3342270 29 100.0 37 ............................. TAGTAAAGGTTATAAGCCTGTGAAGGGTTCTGTTTTG 3342204 29 100.0 36 ............................. TCGGGGTGGCCTGAATATATTTTTATTTGCGCTCTA 3342139 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 87 29 100.0 36 GTATTGCCTTAACTATGTGGGATGTAAAG # Left flank : CAAGTATTTTATTGATGATGAAATATATAAACCCTTGAAGGCGTGGTGGTAAATATATTTGTCGTATTAACATATGATATTGAAGTAAAAAAAATCAACAAGGTACGGAAAATACTGAAGAAGTATTTGGTTTGGACACAAAATTCAGTGTTTGAAGGAGAAATCACAGAAGGTAAATTGCAAAAATGTATAGGACAAATTGGTAAGATTATTGACAAGAATGAAGATTCGATATATATCTATATTGTGGAAAATCCCAAGAATATTGTGAAGAATAAACTTGGAAAAGAAAAGGCACTAGACGAATTGATTTTATGAATTTGCAGCAAACCGATTAATTTAAGCAAGCTCTATAATGGCTTAAAAATAGGCATTAGAAGGATTTATGGGATAAACCGGAAAACACTATTGGAAGTTTACTGCAGTTTAATTATGTTTGAGAAAATCTCAACCCTCTGTATATAGCTTAAACAGAGGATTTTAGATTTCTGTCAAATTGG # Right flank : TCCTTTGTTGGAGAGAATGTTGAAAATTTTGTGTATAAGAGAATGAAAAGACTCCTTCTTGGCAAGAATTACAAAATAATATCCAAGGAGGAGATTTTTTATGTCAACATTATCAAAAGAGCAAGTGAAAGAAATAATTAAGGGCAATAATTTCCAAAGTGTTGCCGATGTAAGTGCATACCTAAGAGATATCTTTAAGGACATTATTCAAGAACTTCTTGAAGCAGAACTTGAAGCTAAATTGGGGTATGGAAAAGATGATGTAGAAAACAAAAATACAGATAATAGCCGAAACGGATATTCACCAAAGACCATAAAAAGTGAATTTGGAGAAGTTGAAATCCAAGTACCAAGGGATCGCAAAGGAGAGTTTAAACCCCAAATTATACCTAAGTATCAGAGGAATGTTTCCGGAATTGAAGAAAAAGTTATTGCTCTGTATGCCAGAGGAATGTCCACCCGGGATATTAGTGAACAAATTGAAGAACTTTACGGCTTTA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGCCTTAACTATGTGGGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 4128372-4132607 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXSB01000001.1 Clostridium sp. Bc-iso-3 Bc-iso-3_contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4128372 37 100.0 35 ..................................... AACGCTCATATGATGGATATGTTCAACCTGCATTA 4128444 37 100.0 36 ..................................... TGAAAACTTGGAGACAATGAATGACAATGACGTATG 4128517 37 100.0 36 ..................................... GTCTCCAATGTGGATATAGTACCACTTTTCGCCATC 4128590 37 100.0 36 ..................................... TAATTATATCATCTGAAAGAGATATTAAGGCTTTTT 4128663 37 100.0 36 ..................................... ATTGTCCCTGTCGATAGATCCATTCTTTCGTTCCGG 4128736 37 100.0 35 ..................................... TAGAGTAAGAATTGATGATTTATATATATTAATAG 4128808 37 100.0 37 ..................................... TCCAATGAAAAACTTAAAAATTTTTGAAAATTTATAT 4128882 37 100.0 37 ..................................... AGATGAACTAAATATTGTACACAAGCCTTAATGTTCC 4128956 37 100.0 37 ..................................... TATGTAGGAATTTCATCTCCATCTAAAAAACTTGCTT 4129030 37 100.0 35 ..................................... TTGAAATCTACAACACTCTGGAGCTTTTCAATATC 4129102 37 100.0 38 ..................................... TTAATCAGTTCGTCTAAAGATATGCCAAAGCTCATTAA 4129177 37 100.0 35 ..................................... ATCCATACCAAAACCTGTAATCTGTTTCAGATTTT 4129249 37 100.0 36 ..................................... TAGATGGGATAAAATTAAAGAAAGGTTGTGGGTATA 4129322 37 100.0 36 ..................................... TATCAGACCTACACTTAGGACATAAAAATATTATTG 4129395 37 100.0 35 ..................................... TTATTGCTATCTATCTTTGGGCGAGTATCAGAAAA 4129467 37 100.0 38 ..................................... AAGTAGACAGAGAAATATACTCTATTAGTTTTGACGGT 4129542 37 100.0 37 ..................................... TAGCCACCATCTTCTAGAATAGTCTTCTTGATTAGTC 4129616 37 100.0 40 ..................................... TATGCCACAAGTAAGAGTGAAGCAAGTAAAAAGGCAGAAG 4129693 37 100.0 36 ..................................... AAATAGTACAATCAAGTATGAAAATTATATTTCAAA 4129766 37 100.0 36 ..................................... GTTAAAAATTTTCTAACTATTTCAATTGAAAACCGA 4129839 37 100.0 35 ..................................... ATTGAACAAGCATTATCAAGAGTTCCTGATACCAT 4129911 37 100.0 37 ..................................... AATCATCAATTAATAAATTTTCGTTTTTATATCTATC 4129985 37 100.0 37 ..................................... TAATATTACACTATAATAAAAGTAACATTATATATTA 4130059 37 100.0 37 ..................................... TAATATTACACTATAATAAAAGTAACATTATATATTA 4130133 37 100.0 36 ..................................... TTACTGTCATCCCTAGCTTCATACCCATTAAAGACT 4130206 37 100.0 37 ..................................... TTTACACGATGCAGAAAACACAATAATATGTGCGGAA 4130280 37 100.0 36 ..................................... TTTAATAAATAAATTATAAAATTTCATGTGTGCATT 4130353 37 100.0 35 ..................................... ATCCTGATTGGACATGTAGAGGTTTCCAATATGAA 4130425 37 100.0 37 ..................................... CTATAAAGGAACTTAGAAATAAGCTGAACCAATTATT 4130499 37 100.0 37 ..................................... CTGATACTCCGATTCCCGATTGGGTACGTGAAACCGA 4130573 37 100.0 40 ..................................... TTGCTGCTCTGTCAGTCGTGGGATAATCCCACTTCTTGGG 4130650 37 100.0 40 ..................................... TGTATAATTCAATTGATGATGTTCAAGGTTATTCAGTACA 4130727 37 100.0 37 ..................................... CCCTTTGTCCAAGCGGAGAAAGCTCCACTATCTATAA 4130801 37 100.0 37 ..................................... AAGCAATACAGAGACAAGCTAAAAACTTAGGAATACA 4130875 37 100.0 37 ..................................... ATCCTAGAAAATGGAGAAACAGTTGTTTTCCCAAGAA 4130949 37 100.0 38 ..................................... ATACAAATGGATATTTATCCGAGACCAATTCATAATGA 4131024 37 100.0 37 ..................................... ATATTGTTGGAGTATAATTCATCCACTCATATGGGCT 4131098 37 100.0 38 ..................................... AATGTATTATCGGTTTTCAATTATCCTTAACAAATCAC 4131173 37 100.0 37 ..................................... TATCCATAAAGGATTCTCAATATCTCTTTTTCTTCAC 4131247 37 100.0 36 ..................................... TAAGTAATCCTAAACTTGTTGAAGTTGGAATTAATA 4131320 37 100.0 36 ..................................... TAAGTAATCCTAAACTTGTTGAAGTTGGAATTAATA 4131393 37 100.0 36 ..................................... AAGATCGTATATTAGACAGTTTTAAGGGTCAAGAAG 4131466 37 100.0 37 ..................................... AATAATTGAATTATTAATTCTTTTTCATCATCAAACA 4131540 37 100.0 38 ..................................... ATTTTTTAGGTAAAGCGTTCCACCAATTCCCCGTATGA 4131615 37 100.0 36 ..................................... ACCATCTTTTGCATGAACTGAGGCTTTTAAAATCCT 4131688 37 100.0 36 ..................................... GTTCTCACCAAACAAATTCTTCGTTGTATTTCTCGA 4131761 37 100.0 34 ..................................... ATTTTTCATTAAATTATTTTTTATCTTCATATAA 4131832 37 100.0 37 ..................................... CTAAACGTGTCATCAATGTCGATATCTTCTGCAACTT 4131906 37 100.0 36 ..................................... AACTTCTAAGATTCTGCTTTCAAGGTGAGCATACTC 4131979 37 100.0 38 ..................................... AAAGTTAGATTAAACGTGTACTTCATGTTTGTAACCTC 4132054 37 100.0 38 ..................................... TTTTTCTTTTCAGGATTATCTATTACACAATTATAATC 4132129 37 100.0 35 ..................................... TTGGGATAAGTGTCATGTAGGAAACTACTGTGACC 4132201 37 100.0 38 ..................................... TACATTTTTCTTATCTAAATAAATAATTTTTTCATTAA 4132276 37 100.0 36 ..................................... TGGAGCAGATTGCTGCAGGAGCATTTACAGATAGCA 4132349 37 100.0 37 ..................................... TCACTTAAAAATCCATACACCCATTTTCCATCACATA 4132423 37 100.0 36 ..................................... TCAGATTTATTATTACTGTTGTCATGCTTATGTTGT 4132496 37 100.0 37 ..................................... TAGTCTCGGCGCGTTGTGTGTTCTACAGAAATTGTTT 4132570 37 89.2 0 ............T...................C..TA | G [4132601] ========== ====== ====== ====== ===================================== ======================================== ================== 58 37 99.8 37 GTTGAAGTAGGACTTCCAGTAAAACAAGGATTGAAAC # Left flank : GGTTTTTCCTTTTCGATATTTGCCCAAGCTGCTGTATCGTGCTTTTCAATCGGTGTTGCCATGTTTTTCTGCTTATACTTGTTTTCTGCCATTTTATCACTCCAAACAATTAACTTACTTTATTATTGCTGTAATGATGTTATTTTATATCCTGACAGATATATTATACTGTTCATTATTAACAAATGATGCTTTTGGTGGAATTTGGTCGTGATTTATTGTCAATTGCCTGTAAGTGTGTTGAAAAAATAGTTAATTTATGATATATTTTATCTGTGATTAGAGTTGTGGGTGGAAAAATGTGGCTACAAAATTATTGCGAAATTTGCATTGGATAGCCTCTGACCTTTGAAAATGGCGGGTTACATGCCTATGTTGGTAACTCAAAAATGTGTGAATTTTAATAAAAAAGGGGCATTTTCTTATGAAAAGTGTGAAAAAAAGTTTCGTCAAAAAATGCCTGTAAGACTTGAAATTAGCTAGATGCAGCCTAAAATGCC # Right flank : AATGTCGTGAAAATGTCATATTAAAAAAAGAAAGAGTCATATCGTAATCTGTTATTATGCCTATCTAAATCTCTCACTAAAGCTTTTCAGAGCATATACAGACTCCTACCATTATTACTACACCTATCTCCTGTATTTACCTAGCAAAAGCTCCTAGAGAACGTGACCATATTGAAGGACGTGGGCTCATGAATTTACTGCGGTTAAAAAAATTTAAGCTATTGATTAATTATTTTCATCGCTTTATAATTATAGTAGCTTTTATTACTTATGTAGTATGGCTTTATTAATTAAAATAAATGCACAGTTTTTAGGTTGTGTTGGTAGAACGGAGGAAAAAGAAAATGCCCATCACTGAATTTTTATCGCGTAATGCTGCGATGTACGGTCATGAAAAATGCCTGACAGAGATTAATCTCGATCTTCAGGAAAGCCATAATGTCATATGGCGTGAGTACGAACTCATCGAAAACAATCCAGCAGGGGAATACCGGAGAGAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGTAGGACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //