Array 1 36944-37691 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTQ01000015.1 Pseudomonas aeruginosa strain AZPAE14872 AZPAE14872_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36944 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 37004 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 37064 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 37124 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37184 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37244 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37304 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37364 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37424 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37484 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37544 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37604 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37664 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48104-46216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTTQ01000015.1 Pseudomonas aeruginosa strain AZPAE14872 AZPAE14872_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48103 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 48043 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 47983 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 47923 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 47863 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 47803 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 47743 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 47683 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 47623 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 47563 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 47503 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 47443 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 47383 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 47323 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 47263 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 47203 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 47143 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 47083 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 47023 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 46963 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 46903 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 46843 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 46783 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 46723 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 46663 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 46603 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 46543 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 46483 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46423 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46363 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 46303 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46243 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //