Array 1 7215-11347 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL878494.1 Neisseria bacilliformis ATCC BAA-1200 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7215 36 80.6 30 ACGC......TT.............G.......... CGGTATCAAGCACTAGGCAAACAAAAACCG A,ATT [7226,7228] 7285 36 100.0 30 .................................... TCTGGTAATCCTTCCTGTGTAACGCCCCCG 7351 36 100.0 30 .................................... TGCATCTTTGGTCGCCATATCAATCAAATG 7417 36 100.0 30 .................................... CGATTGCAGTAGCGTTGAGAAAACCGTTGT 7483 36 100.0 30 .................................... TTTGAACAATTCCAACGTTCCGAGCGTTAC 7549 36 100.0 30 .................................... GTGCGGTCTTTGCCCTTGATGAACTGGATG 7615 36 100.0 30 .................................... TCTATCACAGAGCGGAATTTTATCTGCCGA 7681 36 100.0 30 .................................... TATGGCCGCCATGCCCGTCATGGCTTTCGC 7747 36 100.0 30 .................................... CTGCACGCTGTTTGACCGGCGGCAGTTGGA 7813 36 97.2 30 ..........T......................... TAAAAGGCAGGCCGTCGCGAACGTACTCCA 7879 36 100.0 31 .................................... TCAAAAGCCGTTGAGGGATTTGGTCTGATGA 7946 36 97.2 30 ................................T... AATGAAGTTCAGCTAAGCGCATTCAGGCCG 8012 36 100.0 30 .................................... CATCAGCAAGGCCATTGCGGCTTTGAGCAA 8078 36 100.0 30 .................................... TTCCTCTCGAAAAGGCCGTCGGGCGGCTCT 8144 36 100.0 30 .................................... CATCAGCAAGGCCATTGCGGCTTTGAGCAA 8210 36 100.0 30 .................................... TTCCTCTCGAAAAGGCCGTCGGGCGGCTCT 8276 36 100.0 30 .................................... GGCTTTGTTTGTCCAGTGCTTCCAGCGTTT 8342 36 100.0 30 .................................... CGGAATATGCAGGAATACAACACGGAGGCC 8408 36 100.0 30 .................................... TGGACATCGTGCCGCTGGACATTCAGACGG 8474 36 100.0 30 .................................... ATCGCGGAGAAACTCAGGCGGTTCGTTCAG 8540 36 100.0 30 .................................... AAAGACCTTGCCCCCTTTCTACCCTTGCCC 8606 36 100.0 30 .................................... CACCTTGTCGGGCGGCCTGGTGATCCAGCA 8672 36 97.2 30 ...............................T.... GAAAAAGCCATTGGTGTGGGCGTTTTCTAT 8738 36 100.0 30 .................................... TGAAAAAGGCTTCGCCACAACCACCCAACA 8804 36 100.0 30 .................................... CGAAAATTCCAAATACCGCGAAAACACTCA 8870 36 100.0 30 .................................... TTGCTTCGTCGACTATCAAGACCGAGCCTT 8936 36 100.0 30 .................................... GAAGCTTCCGAATTGCTGCATTGCTGGATG 9002 36 100.0 30 .................................... CATATAGGCGATTAAAAGCGCGTTTATTCC 9068 36 100.0 31 .................................... GCACCGCCTGCCAACAGGAAATCGAACGCTA 9135 36 100.0 30 .................................... CCCGTGTTCGTGAACTCAAAAACTTTTACG 9201 36 100.0 30 .................................... TCCCCCTTGTCTTTCACGTTCGGGCAGCTT 9267 36 100.0 30 .................................... CCGAGAAGGAAAACCCATGAGCACTTCCCA 9333 36 100.0 30 .................................... ACAGATCACGGCCTCTACGCAAAGTCTACG 9399 36 100.0 29 .................................... AAAAAAACAGGCGGCCATCACTACCGCCA 9464 36 100.0 30 .................................... ACTCCCCAACGCCCATCTGCAGCACGCCGC 9530 36 100.0 30 .................................... GTTCACGAAATCAAGGAGCAGACCGATGGT 9596 36 100.0 30 .................................... TCATACTTGGAAACATCCCCCGCACACGCA 9662 36 100.0 30 .................................... GGCTGGGCGAGAAGTACAAACTAAATGGGC 9728 36 100.0 30 .................................... CACCCCCCGTGCTACCCGCCCGCAAAAGAC 9794 36 100.0 30 .................................... CGGAATATGCAGGAATACAACACGGAGGAC 9860 36 100.0 30 .................................... CCGCAAAACCGTAACCGACGCGCTTTCACG 9926 36 100.0 30 .................................... CAGGACAGCAGGCGTCCGACGGGCAGCCAT 9992 36 100.0 30 .................................... GAAGTTTACAGCATACATAAGCCCTTTTTG 10058 36 100.0 30 .................................... AGGAAGGCGGGGATGACGCCGCTGACTTTG 10124 36 100.0 30 .................................... AAATGCGATAACTTTTAAAAAAGGGTAATA 10190 36 100.0 30 .................................... AGCTATCACTAAAATCAGTTTTAGTTTCGG 10256 36 100.0 30 .................................... ATCCGTCAACTCATTATGCGGCAGTTTCAA 10322 36 100.0 30 .................................... GAAAGAATTGGGTTGGACTGACGAGGACAT 10388 36 100.0 30 .................................... TTGGGCATGAACAAGTAAAAGGCCAGCGAG 10454 36 100.0 30 .................................... TTCTGCGGCTGCGCTATCAGACGGCCGTCA 10520 36 100.0 30 .................................... ATAATTAATGGACTTTTGATAAAGAAAATC 10586 36 100.0 30 .................................... AAAGCATTGTCCGTTTTGCAAATAAGACAT 10652 36 100.0 30 .................................... TCGCCTCATCGACTATCAGAACCGAACCTT 10718 36 100.0 30 .................................... TTTAGAAACCACAGCACCGAAACAAATCGA 10784 36 100.0 30 .................................... TGCACGGCAAGAAAAGTGCGGATGACTTGC 10850 36 100.0 30 .................................... TGGGTGGCGGCTGCGGTGAATATCAATACG 10916 36 100.0 30 .................................... TGGGAAAAAGCACTGTGCAGATTTGCACAA 10982 36 100.0 30 .................................... TTTAGAAACAACAGCCCCGAAACAAATCGA 11048 36 100.0 30 .................................... CAATTTGAGTGGCGTTTAAGAAACCAGACT 11114 36 100.0 30 .................................... AGGGGCGCAGAGCTGTTCCGCCACGACACT 11180 36 100.0 30 .................................... CGAATAATCGATCCCGCGCAGCCCCACCAG 11246 36 100.0 30 .................................... GTTTTTCCTGAACGACGACCTGCGGGGACT 11312 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 63 36 99.6 30 GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT # Left flank : GGTGCGAGCAAGGTTTGATGACCTGCCATTCGAAAAACTCGGCCGCACTTTTGTGCAGTTCTGTCCGGCAGAATGGCGACGTACAGTTCGCGCGAGAAGTTGCAAATGGCAACAAACAGATAATCGAGTTTATCGGTGGCTCTCCGCCCTTTGAGCAGCGGCAGCCATTCGGTGGTATCCACATGAACTTGTTGTAGCGTTTGGCTTGCTTTTTGAGCTTCTATTGAATGGCGCGTTCCACTTTGGTCAAACGGCGCATTCCGTAATACGCTTGCTTACAGCGGTTGTTGGTGCTGTTTTGCGGTGCGAGCAACCTGCCGCGTGCGGCTTTGAGCACGCGGTAGATGGTCTGACGGCTAACCATGTAACGGCGGGCGAGTGAGGTAACGCTTTCTTTGTTCTGTGTGTAGGCCAGCCAGATGACTTGGCGGTGGTGCGGGGTAAGGCGTGTGTTTTTGTGGATCTTCATTTACGGTATTGTCCTTAGAATACTGTAAACA # Right flank : TCCAAACAGGATAAATCATTGTTAAAAAATGGTTTATCCTGTTTTCTTTATCTAAAAAACACATTCAAAACAGCAAAAGCTGGTCTGCATTTACCTTTTTTTCACGAATTTGCCGCGTGCCCACCAACACGTCCATGCTCGCATATTGCTTCTCCGTTATCGTCAAACAGCGTATTGAGCCCTCCGTTGGCAGTGCTGCACACAATCGGTTGTAGTGTTTTTGCAACGAATCTCTACCACGCACGATGCGGGTGTAAACAGACAATTGCAACATTAGGTAACCATCTTGTTTTAAAAAATGTCTGAATTGGTTCGCTGCCCGTCGTTTCGCTTCGGTGGTAACGGGTAAATCAAACAATACGATTAGTCGCATAAATTTTGCCTCACTCATAATAATGTACTTTCAATTCTTGCATTTGCGGTAATTTTAAGATTTTGCTGCCGCTTTCTGATAAGGCAGCCTGAAAAGACTGCACGGTTCTATCGATGGCAGCAAGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //