Array 1 33467-34104 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYR01000065.1 Schleiferilactobacillus collinoides DSM 20515 = JCM 1123 strain DSM 20515 NODE_84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33467 28 100.0 33 ............................ TAGATAATGCTTGCTGTTGGCAATTGTCTTCTT 33528 28 100.0 33 ............................ CGGCCACCAGCCACAAAACTACTTAGGACAAGT 33589 28 100.0 33 ............................ TAGGCGCACTTCTGGGAACAAGCCTTAGATTGT 33650 28 100.0 33 ............................ CCGCGGGCACTTCCCGAAAGCGTGCTCACATGA 33711 28 100.0 33 ............................ CATAAACTTTCCTGTGGTGGTACTGGTATCGAC 33772 28 100.0 33 ............................ CCTGTGGTAGTTTTCACGCTTCCGAGAAAAAGG 33833 28 100.0 33 ............................ CGCCAAACGTCACTACTTCAACATCGGATACGA 33894 28 100.0 33 ............................ TATGACTGGATTTGGGAAAAGCCTAAAGCTTCC 33955 28 100.0 33 ............................ TAATCTTGTCGCCAACACCGTTTAAAGCCTGCA 34016 28 96.4 33 ...........................T GATCATCGGTGCCTTGACGATACCTGGTGCGTA 34077 28 82.1 0 ..........TA.A.........A.C.. | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.0 33 GTATTCCCCGCGTGTGCGGGGGTGATCC # Left flank : TCCCAAAACGTTGGTATCGTGCAGTTGTCAGGCATCAAGAAATTACGCCCCGTTTACTACTCAGCTTTCTTGCTGCTGTTACTTGGCCTGATTCCGAAGTTTGGTGCGATTGCAACTCTAATCCCATCTTCAGTTCTTGGTGGCGCCATGCTGGTTATGTTTGGTATGGTGGGTGCGCAAGGCATCAAGATGCTGTTGAAGGTTGAGTTGAATAACAAAAACATGCTCATTATTGCTGTTTCGATTGGCCTTGGTTTGGGTGTGACGACTGAACCAACTTTGTTCCAGTTCCTGCCTACCGAAGTTCAGACTATCCTGAGTAACGGGATGGTTGTTGGGAGCTTTACGGCGGTTATTTTGAACTTGTTGCTGAATAATACTTCTTTGAAAAACAAAGTGGAAGAAGAAAAATCATAAATTTGAAGTATGTGAGATTATCAAGTCATAAAAATGAGGGACTTTCTAATTATTGGATGCCGGTTTAATGGGATTTGTTTAGT # Right flank : CATGCCCCTTGAATTCCGCCATCGGTTTCAATGGACTGCTTTCTGTATTCCCTGCACTTACAGAGGTGCTTGTTTTAATTAAAAAAGAAAAGGTACTAAAAGGTTTAGTACAAAAAAAGAGAACTTGTCGATTGACGAGTTCTCTTTTTTGTAGTGGCTCTTTTGTTTCATAAACCATGTAAGCGCATTATATTTTCATAGTTACAGTAAAATAAGTGTTAGTCAAGAATGGTAAAATTTAGTTGTATAGGTTTTACTTATCATCGAGTAAGCCTAAAAATTATCAGGACAATTGAGTCATTTTGAATTAATAATAAATGTAAACGCATGCTAACCGGGCAACATTCTCATAAATGGTGGTTGCAGCTAACCTGAAAGAAAAGTAGGAAATCAGAATGTCGGTTAATAAATTCAAGAAAACAAACGTAAAAACAAGGGAGACGGCTATGAAGAAAAAATCAAATCTTGACATTGCAAACGAGAAATTAGACGCTTTTGAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTGTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1969-2668 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYR01000029.1 Schleiferilactobacillus collinoides DSM 20515 = JCM 1123 strain DSM 20515 NODE_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1969 28 100.0 33 ............................ TCAAAAAAGGAGGTAACATTTATGAAATTTTCA 2030 28 100.0 33 ............................ CTTTGTTGTGTTTATCCCAAGCAATTTCTTTAA 2091 28 100.0 33 ............................ CATATGACGATTTTTGCTGGAGTTGTAACCGCA 2152 28 96.4 32 .........................C.. GTCACATTCATGCTCGATAGCTGGGATATTGT 2212 28 100.0 33 ............................ CAGTCAGGAAGACCTGAGTAATGCAATCTTGCT 2273 28 100.0 33 ............................ CTACAACGTGTACGCCAGTGCTAAAGACGCTGG 2334 28 100.0 33 ............................ CGGAAGCCAGTCAACGGGTTGCCTTGGGTTTTC 2395 28 100.0 33 ............................ TGAGTTTAACAAGCATGTACAAGCGCTGGAAGA 2456 28 100.0 33 ............................ TTCCAGCCGAAAATTCCCAATTTCTGATTTTCA 2517 28 100.0 33 ............................ TATCTTCTCCGGCTTTGCCCGTCACAAGCTCAC 2578 28 100.0 33 ............................ TAAGCGTCCGAATATGAATCGGGGATAAAGACC 2639 28 78.6 0 .......T....CA..T..A..A..... | A,A [2663,2666] ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.9 33 GTATTCCCCGCATGTGCGGGGGTGATCC # Left flank : TTGTAAATAATGACATCAGCATCGCTGACGATTTTGGCTGTTTTCGTTGTGGCTTCGTATTCGTGTGGATCCATGCTGGGGGAGTTGATGATAGATTTTACTGTACCCTTGTCACCGAGGACGGCTTTGGCGGTCTCACCGTAGAAGTCTAAGGAAGTGACTACATGGATTTTGTGAGTTGCTGCAGAACGAGTTGTCGATTTGGTGTTTGTGCAACCTGTCAGTACAATTAATAGGAATAGACTTGCAAAAACGAATAAAAAACGAGTGATGTGATGTTGACGAATAGTCAAAATCAAGCCCCCAAGTTAAAAAGTAATTGTTACGCTTAGACTTTCATCTTCGCAGATTTTAACGCGAATTGCAATTGCGTTTTTATTTTCCTAGTTTAATTGCAACAAGTATATTAGAATCTTAATTGGGTGATCATTTGGTGACCAAGTCATAAAAAAACGCGTTTTGCTGATTTTGAAATGTTGATTTGATGGGATTTGTTTAGT # Right flank : CAAAGAAACGATATCATGCGTTTCGATTGAATTTTTTTGTAGACAATTTATTTTGTATCACAAAATAATAAGAAACCATGCAAAGTCTACACTTGACAATGCATGCGTTTTTTGTTTTACATACGGTGAACATGAAAAAAATTAAAAAACAAAAATAATTCTATGCATAAAAACGTTTTTAAATTAATATAAGGATAAGTGATTTTTTATATGTGTAGACAGTTGATTCTGTAGGGGGATTCACTGTCGAAAAAACGTATAAAAAATATAAAACTAGAGAGGATTGATAACGTAGATACATGTATCGGGAATAAAGGAGTGTGATAGTTCTGGTTACTTTAACGAATCAAGCGACAAGTCTTTGGGCTAAAAAACGGTCTGAGGATGGTGAGCATTACTGGTTACCACTAATTACTCATCTCAGTGATACACAGAGTACGATAAATTGGCTTTTTAATCATTGGTTTAGTCCTGGGCAAAGACAATTATTAACGCAACGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCATGTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 12470-13841 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYR01000029.1 Schleiferilactobacillus collinoides DSM 20515 = JCM 1123 strain DSM 20515 NODE_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 12470 28 100.0 33 ............................ CTGCTGATTGCCAGCACGGGGATGTGATGACGG 12531 28 100.0 33 ............................ CTCACCAGCTGTCAATTTGAGTTTCCGTGTGAC 12592 28 100.0 33 ............................ CTGCCAGCGACCGTTGCAGAAACGTGATGAGGT 12653 28 100.0 33 ............................ TTTCATTTGGCGTTGCAGTGGTTGTCGCGGGGC 12714 28 100.0 33 ............................ ATCAGAAAGCCGGTGCCGATGGTGACTAAGAGA 12775 28 100.0 33 ............................ TATATAAAGTGTCGAAAGGGACAAGGAAACAAA 12836 28 96.4 33 .....T...................... TCTAACCGCTTAAAACTGTGTCTACCCATTTTG 12897 28 100.0 33 ............................ TATGCACGACACACGCACACGTATTTCAACGTT 12958 28 100.0 33 ............................ CTGAGCAACATTCATTTCGTCCCGATACAGGGC 13019 28 100.0 33 ............................ TCGATCAAGGACGATGTCTTTACTATGCCAGTG 13080 28 100.0 33 ............................ TGCAATAACGGCATGCCTGAAATCACGTACATG 13141 28 100.0 33 ............................ CATTTCGACCGATATTGCCTGTGTCACCATCGA 13202 28 100.0 33 ............................ TGCCTTGCGTATACAAAGTCGCGTTTGAGAAAT 13263 28 100.0 33 ............................ TACACCTATCTTGATGCTGTGGAAGCTGACTTT 13324 28 100.0 33 ............................ CATCGCCGATAGTGGTAGTGTCATTGTCTTTAG 13385 28 100.0 33 ............................ TTAACAATCGAACCACCATTGACTGATAAGCCT 13446 28 100.0 33 ............................ CCGACGTATCACGAGCTCGTGGTGGCGTCTCGT 13507 28 100.0 33 ............................ TTACGACCGGCGAGATTATGAACCGCCTCACGA 13568 28 100.0 33 ............................ CCGCGTTCAACAGAACTGGTCGTGACAGTCGTT 13629 28 100.0 33 ............................ CAGTACGGCATGGACGGTATGCTCAACCTCGAT 13690 28 100.0 33 ............................ TGATTGAGTGACCTTGGTCGACTTAGTGACAGG 13751 28 100.0 34 ............................ CATGCAGCAGAATGCGTCTCACATTACCCCTATA 13813 27 82.1 0 .....................A..GGT- | T,T [13819,13835] Deletion [13840] ========== ====== ====== ====== ============================ ================================== ================== 23 28 99.1 33 GTATTCCCCGCACATGCGGGGGTGATCC # Left flank : GTTGCTACAGATAACATAATAGCGATTGGTGCTGTCAAATCGTCCGGTATTGCTGTTGAAAAATTTTATCAACTGATTAACATCAATCAAAAAATTCCGGCAGCCATAACAAAGTTAACGACTTTAACGTCAGAACAATTGATTTCTGAGGGTATACCTTTAGAAGATGCCCTAAGTGGACTTCAAAAATTTATTGGTGACTCACCTCTGATTGGATACAACGTTCATTTTGACGAAAGTTTCTTAACGGCAAGCTTTCGAAAAACTAGGTTGTCAATTTTGGCCAATCATTTTTATGATTTGATGCCCGTTGTGAAAAAGAATAACCAATTTTTAGATAATTACCGGTTAAAAACAGTGTTGGAAACATATAAAATTAAAAATGAACATCCACATAATGCATTGGCGGATGCTCAAGCAACTTATGAGTTAGCAGAGCAACTCATAAAAAAACGGGTTTTGCGATTTTAAGAATGCTGCTATAGTGGGATTTGTTTAGT # Right flank : TGGCAAGGTTAAGCTTGATAGTCATCCGAGTGTTTTCTGTTATGTTCGGTGTTGTTGCTGATGTAGTATTCATTAATACCTACAGTGGTTAAAAGAGTGAGATGGTTGTGAAAAAATCTGACCTTTATTTAATGCTCTAAGTAACTGTTAGTATCGATAAGAGATAAAAGTTCATTATATTGAAATATTTAAATCGTTTCCGGATTTTTTACCATCAAAATAGAGACGAATCAATACGTACTAGTATGATTGAGGCATCTTATAACAATTGGTCATAGATTAATATTAACTTTTATATATAAATTAATTCTAATAGATGATAAGCTAATATATAAGAAATAAAACCCACAAAAATAATTGAGATGACAAACATTGACACCAAATAAAGAATTTGAGTATACAAAATTAAAGTTAGGAAAATACGGAATGCCAACTTGGGATGGTTTAATTGGCGTAACGATTGAATTAGCGCTAACACAGAAAGAATGGAAATCAAAGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //