Array 1 269488-269224 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018092.1 Synechococcus lividus PCC 6715 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 269487 36 100.0 37 .................................... ACACCTTTTAACTCATGCACGCTGCCGTCGTCTAGAC 269414 36 100.0 41 .................................... GTATCACCCAGCTTGTGCCGTTAAACCCACCTCCTTTTAAA 269337 36 100.0 42 .................................... GAGCGGAACGATCACGCTGTTGCGCCCTATCCATGCGCCTAG 269259 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 4 36 100.0 40 CCTTCCTCTTCAGGGGGAAGGCGATCGAATGGAAAC # Left flank : AGCAGCTTCCTACCCAACAGATTGCCCAATTGTTTTTCATTGTTTAAACGGGAATAGTTGCAAGCATTTTCCTTGTAAGGATTTTAGGAAGTTTAATCGTGGATCTTTAGTGACACCAAAAATCGTAATAACTTGATACTCTCCTAAATCGGAAACCCAGACAGGAGATGGTTTTCCAGTTGAACCGCAAAGTCTTTCGTCGTAATTCCCATTATGTTTGAGCTTAGGATCGTGTAACAGTGAGAGACCATAGGGTTTTTCTCCTCGACTATCACCACTACAGATGACAATGCGGCAGTTTCCATCAAGTACCTCTAACCAATCTTCAGAAGTAACAGTAGTAACAGTTCCTGCACTCAGTAATTGAGGGTGTTGACTATTAATTTTCTTGCCGGTTAAATAGGCGATCGCTTCATAAATAGAACGCAAGTTTCTCTGGAATAGATCCCGAAAACCCTTCTCGTCTTCAGGCAATTGCCACAGGTCAGTCTTTTCATTAA # Right flank : TCCACCAAACACTTGGATATTGGCAAAGGCACAAACAGGTGAGGCATGACCCACCCGAATGGCTTGGTTGGGTTCGCCTTTACCACAGAAGGGGGTGCCGAACATCTCTGTTGTCGTTGCATCCCCAACCGCAATGAGGTTATGCCAGAAGTCAGGGGTGGTGCCGCGATAATTAGGGTTACGCACGGTGCGCGTTAGGCGACCCTGTTCAATGAGCTTGGCATACTCACAACCAAACTGAAACTTCAGGCGATAGTCATCAATAGACCACGAGCGATTAGCTTCCATATAGATTCCCGATTCAATCCCCGCAATCATGTCCTCAAAGCTGGTGTGCCCCGGCTCAATGTTCAGGTTTGCCATGCGATCAATGGGGGGGCGGTTCCACGAACTAGCCCGCGCATTTGCTACCCCCACTACCCCAGCCCGCTGCTGGCTTTCAAGGCTACCTAGCCCGCGCAGCAAGCGCCCTTCTTTAATCAGGTAGGTGCGCTCTGCGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCCTCTTCAGGGGGAAGGCGATCGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 703223-703871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018092.1 Synechococcus lividus PCC 6715 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 703223 36 100.0 37 .................................... AAGAACCAGTTGAAGGGGGGCTGTATGTGATGGGGAT 703296 36 100.0 44 .................................... CCTCTCCTATGGTCAGGACATCCTGTGGAAACAGGGCACCAGTA 703376 36 100.0 39 .................................... TTAAGAATCCCATCAGCGGCGGTTACTCCAGATCGTACC 703451 36 100.0 40 .................................... CTAGTTGGGGGCAAAGTACCAGTTGAGGCCGCCATTTCAA 703527 36 100.0 43 .................................... TTAAAATTTTACCTCGTGCTGAATGGCGGGAGCCATCCTCGTT 703606 36 100.0 40 .................................... AACTCATGTAGGGATATTGTCCCTACAGATTTGATTTTGA 703682 36 100.0 41 .................................... CTAGTCGGAACACGGATAACGAGCTGTTGTTGGATTTTCCT 703759 36 100.0 41 .................................... TTCAAGAATTGTCTAAACCCGGACATGATTCCTCCTTTGTT 703836 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================================ ================== 9 36 99.7 41 CCTTCCTCTTTATGGGGAAGGCGATCAAATGGAAAC # Left flank : ACACAGCCCATGAGTGCTCTGTCGGGAGGAGAAACCAAACGGGCATTACTCGCCTATTGCCTTGTGCAGCCCCGTCGCCTATTAATTTTGGACGAAGCCCCCGCTGGCCTAGACCACCATGCCGAACAACAGTTTTATGATCTGCTGACAGAACTCAAAGAAGAAGAGGGCTGGACAATTTTGCAAGTGTCCCACAACCTTGAGCGGATCAAAGCCACCTGCGACTATGTCCTTTACTTGAACGGCTCTGTACAGGGACTAGGCTCCCCTGAGCAGGTGCTCCAACACGTTGTGGCAACACTCTCCCCCCCCTATTCTGCCGAGGGATCGACCCCAGAGCCTCGAACCCCCATTGATGCGTTAGATCCCTCGGAATCGCTCAGGAAGCGGCTTTGAGGATTTTGTGCTATGTCGTATAAAAAACATTGCTTACCTGCAAAGGGGATCCCTCGGAATAGGGGGTTGCAGTTCGCTCAGGGAGCGGCTAGTATAGAGGTACC # Right flank : ACAAATGGAAATCGAGTGGAAACAATGAAAATGCTATTTGGGTTTCGCAGGCTGGCGTAACAACCGATCCACAAAGGCAAGGGCGCTGGCGCGATCGCCAATCTCGCCACGGGCTTGAGCTGCCTCGATCGCCTTCAAAATCCGGCCAATCTCTGGACCTTGGCGCAATTGAAACTGTTGCACTAGGTCAGCACCCCGCACAAGCTGAGGGGGGTGAGCCACCGTATTAGTAGGATCGAGCCATGCCCTTACTAAGGGGATGAGGTGAGCTTTGGGGATAGTGCGACTCAGTGCCAGCGCAACAAAGGCTGGAAAAAAATCCTGTGCAGCTCGAAAAAGATAGAAGGACTGTTCCCGATTGAGGGGCTGCTGGAGTGGCGTCAACCAGTCTTGCAGCAAGCGACATAGGACTTTAACAACTTTAATTTCATTAGCGGTGTAGGTAAGGGCAAACAGTTGTGTCTCCGCCTGCTGGGGGTCTGGATGCACTAAGCAGGTGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCCTCTTTATGGGGAAGGCGATCAAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1995953-1995769 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018092.1 Synechococcus lividus PCC 6715 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1995952 36 100.0 38 .................................... ATGAACTCGTCCTCACTTTTGTACACGGTGTGGTACCC 1995878 36 100.0 38 .................................... TGGTGCATAGCCCCTCCCTGTATTAGTACACCAATACA 1995804 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 100.0 38 CCTTCCTCTTCATGGGGAAGGCGATCGAATGGAAAC # Left flank : ACAGCTTATTGATTTTCTGCAGCGGGAGATGGCACTGCCCACCTCTGCCATTAACTTTGGCCTCAAGCAGTGCGATGAGAAAGTCAACCTGTTGCCAGTGGTACTGTGGCAGTATGGCCTAGTCAGCCTTGAGCAGTTGGATCGCATTTTCGAGTGGATGGAGGCTAGCCACAGCTAGTTTTGCCTGCTGTGACACTTTGGCAAGAAGTTGCCATAGGCTGCTCTGCCTAGCTCTGAGTACTCCTTCCATTAGCTTTTCGGTAGCGAAACAGCAGATTAGATTCGCGACTCCACCCTTGTTTAGAGTATGCCGCAAGCTCCGAGGGATCTGCCGAATGGCTTGGATACCCCATTGATGCGTTGGATCCCTCGGAGTCCCTCAGGAAGCGGCTTTGAAGATTTTATACTATGTCGTATAAAAAACATTGCTTGCTTGCAACGGGGATCCCTCGGAATAGGGGGTTGCAGTTCGCTCAGGGAGCGGCTAGTATAGGGGTACT # Right flank : TTAATTAATAAGGGAATAAAGATACTTGCAGGGAGCTAGTATGCGCTTTACGGTTCTGACTGTAGCTGTCGTGGTATCCTTAGTCGCCCTCTATGCTTGGGGCGGCAGTTGGCTTCGGAACCTTGGCACCTTGGGTGTTCTCACGCTCTACTGGTTTGCTGCCTTTCAGCCTAAGTCTTGACCTGCTGGCACCTTAATGATTATCTTTTGCCATAAACAACCTTCCTCATAAGACGGCTGTGCAACTTCGAGCAGGGGGTAGATTTCTGTCGCCTCCTCGTTAGCATTGCCTTGGAACAGATTAGAATCGCAGCCGAAGGTGCTAGCTCTTAGGGATAGGGTGTCATGAGCCAACAAGCCGTAGGAATGATTCAGGTCATGGGATACCCAGCAGCACTTGCGGTTGCTGACACCTTGGTGAAAGCAGCTAATGTACAACTGGTGAGTTGTGAAGGGATTGGAAGTGGCTACTGGACGCTGGTGATTCGTGGCGCAGTTGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCCTCTTCATGGGGAAGGCGATCGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA //