Array 1 208768-207900 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVN01000003.1 Pasteurella multocida strain HNA08 Contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 208767 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 208707 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 208647 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 208587 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 208527 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 208467 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 208407 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 208347 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 208287 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 208227 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208167 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208107 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208047 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 207987 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 207927 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 92669-91441 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVN01000006.1 Pasteurella multocida strain HNA08 Contig006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 92668 28 100.0 33 ............................ CTGTATTGATGAAACTTGCCTATGGATTTGGTT 92607 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 92547 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 92487 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 92427 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 92367 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 92307 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 92247 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 92187 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 92127 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 92067 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 92007 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 91947 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 91887 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 91827 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91767 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91707 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91647 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91587 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91527 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91467 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //