Array 1 10588-12925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAISL010000037.1 [Clostridium] symbiosum strain MSK.7.21 NODE_37_length_39456_cov_174.561, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 10588 32 100.0 33 ................................ CAGCCATAGTAAGGTCGACAACGGACCAATAAT 10653 32 100.0 34 ................................ CCGGAAAGATGGGTTTAGTTTAGACACCTAAATT 10719 32 100.0 33 ................................ CCTTCATCCCGCTGTCATGATTTCTGCTTTTTC 10784 32 100.0 33 ................................ CGTACAGTATACCGGAGGCCAGCGACGGTGTAA 10849 32 100.0 33 ................................ CTGTTTTATTTGATTTTTTGGAGGATAACTGTT 10914 32 100.0 35 ................................ GATATGCGAAAGCAAACAAATGAACAGTTGCAGAA 10981 32 100.0 34 ................................ TCCATCAAAAAATAACTCTGTGGAAATTTCATCC 11047 32 100.0 35 ................................ TGTCGAATAAACGCTGAGCATGCAGGGTTTATTTA 11114 32 100.0 35 ................................ GTTTACGATTAGGTGATGATGGATTGCTTTATCTT 11181 32 100.0 33 ................................ TCGCAAATTATGAAACTGGCCGAAATACGCCGA 11246 32 100.0 33 ................................ CTGTTTGACAGGTCAATACTATCCCGGTTAAGC 11311 32 100.0 35 ................................ GTTTACGATTAGGTGATGATGGATTGCTTTATCTT 11378 32 100.0 37 ................................ CGCAGTGATAACATTCATAGGCACCACGCGGTTCCAT 11447 32 100.0 35 ................................ AATCGGGTACAGGATTTTATAGGCTTCATATGCCC 11514 32 100.0 34 ................................ GTTTTGCATCCTTTCTTTGAAATACCGGAACAGG 11580 32 100.0 33 ................................ AAACATGTCCGACGGATTCAGTTCATTCTTGTC 11645 32 100.0 33 ................................ TGTCATCTGCTCCGCCAGGTCTAATTTCAGGCC 11710 32 100.0 34 ................................ AGCCTCGGTGACGCGGCCCATCATCAAAAACAAA 11776 32 100.0 34 ................................ CCTTTGCCGTCAAATACTGGTTCGCTGTGGCTGT 11842 32 100.0 34 ................................ AAGGTGAGGAAGGGGGAAATGCCGCATGAGTGCA 11908 32 100.0 33 ................................ TCTTATAGTGTCAGAAAGGAGGATTTTTATGCT 11973 32 100.0 35 ................................ ATGTTTCATATGTAAGAAATTCCGTTTCTGGTCAG 12040 32 100.0 33 ................................ CTTTTTATGCGCTGTGTACTCGTTCCAATATTC 12105 32 100.0 35 ................................ AATGTATTGTTTGAATAGCTGGTGTGTCCCCGTGG 12172 32 100.0 33 ................................ CATCACCTTCCAGCCCCGACGTATCCGAAAGAT 12237 32 100.0 34 ................................ GTTCCGATGCATCCGCTAAATCTGGCGTTACCAA 12303 32 100.0 33 ................................ CGGATCGGTTCTTTTCATTTTGATACAGTACAT 12368 32 100.0 34 ................................ GTCGATTATTTTATTAGTATCTCCTTCAGACGCC 12434 32 100.0 33 ................................ AGTATCCCTGGCATAGGCACATCCCAGGCCAAG 12499 32 100.0 33 ................................ GACTGTTTGGGTTGGGAATCGCGATCATAGTTT 12564 32 100.0 35 ................................ AGGGGATGGGAAGGCGACAGCGTATTGTTACAGAA 12631 32 100.0 34 ................................ TGAATATTACTATGCATAAGTCGGCAGGCCTTCT 12697 32 100.0 35 ................................ ATCCGGATGACTGCTGCGCCGGTATAATCATGTTT 12764 32 100.0 33 ................................ ACAAGCGTCTATATACTGGGTCAGAATCTCCTT 12829 32 100.0 33 ................................ GCTGTACTGTCTTTCCCTCCAGACCAACTGCAG 12894 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ===================================== ================== 36 32 99.7 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTAGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCT # Right flank : TTTTATTGGCGCAAAGAGATGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 27853-27285 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAISL010000022.1 [Clostridium] symbiosum strain MSK.7.21 NODE_22_length_57482_cov_218.727, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 27852 33 100.0 34 ................................. GCCACAGCAGGAGTAACGAAAGTAAGCATTGAGG 27785 33 100.0 34 ................................. TTGTTCCTCCTTCTTATAACCATTTGAACAATTC 27718 33 97.0 34 .........T....................... CTTCATAAAATCTTCATTTACGCGAGTATTCCAG 27651 33 100.0 34 ................................. ATACACTTCCGCGCCAGATATATCGTGTTTTCCG 27584 33 100.0 33 ................................. TGATTGCTCCACCATCTCCACACGATTTTGAAA 27518 33 100.0 35 ................................. CGATACGTGAAGGCGAAGCTCCACATTGGGGCGTA 27450 33 100.0 33 ................................. CTTGAAGTTATGCAGGGCAAGTGGGAGGGCGTA 27384 33 100.0 34 ................................. AAAGAGGTTAACGCCTGCTCGTGTACCTTCTGCT 27317 33 84.8 0 ......T.......T.........A...T..G. | ========== ====== ====== ====== ================================= =================================== ================== 9 33 98.0 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTCTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAACCTATTTAGAGTGAAAATTAAACATAATATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTAACTATGGGTTGATTTAATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : TTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATATGCTTCACTTAGTCTGTTCGCTGACGCTATCAAAGCCATATCAATTCCCCCTCCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAGAGCAGAACATACATTTCCCAATAATAATATAACTAACACATAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATCATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAGATAATCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGTAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACTCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAACTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 28833-28600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAISL010000022.1 [Clostridium] symbiosum strain MSK.7.21 NODE_22_length_57482_cov_218.727, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 28832 33 100.0 33 ................................. CACACACAACACTGTGTAACAATACGCCGGCAT 28766 33 100.0 34 ................................. GGATGGCAGGAATGGATGAGCAAAGCATCCGATA 28699 33 100.0 34 ................................. GGCTGGCAGGAATGGATGGACAAAGCATCCGATA 28632 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 100.0 34 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : ACAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATTGGATTTTATCTTAAGCGGCTTTAAATTAGTGTGAAGCGCGGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTGAATTCTTCGAGCGTGACAAAACATAATAAACTGCTGGGTACACTGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATTGTACGGGAAAATTTAGCACATATGGATAATGGAGGTAATTTAAAAGAGGGTTGATTTTTAGTAAGGAAACTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATGTAAGGATAATTGTGTATTTTTGCT # Right flank : TCAACGACTGGAAGTTGGAAGCACTTATGTTGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTGCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATAAATAAATTTAGAGAGGAAAGAGACTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTCTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAACCTATTTAGAGTGAAAATTAAACATAATATTTCATTATT # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //