Array 1 481999-483939 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQE01000002.1 Stappia indica strain SBBC 49 NODE_2_length_723176_cov_42.5026_ID_252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 481999 32 100.0 34 ................................ GAAGACATAGGGAAGGAAAAGCACTACTCTCCGG 482065 32 100.0 34 ................................ GCTTCGTTCGACCCCCACCGCACCCAAATGCGCG 482131 32 100.0 33 ................................ CGCTGTCACGCATCATCCCGCGATGTCATCCAG 482196 32 100.0 34 ................................ ATTTCTGAATGGCTCGAGGTCAGGCGGGGTCATA 482262 32 100.0 35 ................................ GCGTCATGGCCTATCTCGTGCCCATGCTCGCCCTC 482329 32 100.0 34 ................................ CGGCCGATAGAACCGGCCACCGATACGCGGCGGC 482395 32 100.0 33 ................................ CGCTCTACAAGTTCACCCGCGCGATCCTGTCAG 482460 32 100.0 34 ................................ CCCGTGAAACACTTGCGCCGCCGGCTTGTGAAAC 482526 32 100.0 33 ................................ GGCGGCTTGTTGGTCGAAAGCACCAACAATTAT 482591 32 100.0 34 ................................ GACTACGCAATCACCTCCGGCCCTTCTGCCGCGC 482657 32 100.0 35 ................................ AAGCCAGCTTTCAAGCCCGGTGCATCGAAGCGGGC 482724 32 100.0 34 ................................ GACAAGGCGCGCGCCGCGCTGGCTAAGGTCAAGG 482790 32 100.0 32 ................................ CTGTCTCGGCGGTGACGCGAGCTTTCAGGGTC 482854 32 100.0 34 ................................ CTTGAGGGCAAGAAGACGGTCCAGGTGCCGCTGA 482920 32 100.0 33 ................................ CTCTTCCGAGAAGAAGTCTTCCGTAATGTCCGT 482985 32 100.0 34 ................................ GGCACTATCGGCAGGCGATGGCGCAGCCGGAACC 483051 32 100.0 34 ................................ CATTGCCGAAGCCGCATCCGCGATTTGCTTCGCG 483117 32 100.0 34 ................................ CTTGAGGGCAAGAAGACGGTCCAGGTGCCGCTGA 483183 32 100.0 34 ................................ CGTACCGCGCGAAGGACGTTTTTGCGCCCACCGA 483249 32 100.0 33 ................................ CTGACCAAGGATCTTCTCGGTGCGCTCCTTGTC 483314 32 100.0 34 ................................ ATGATGGTGGTGTCGGTGGCGTCCATCTGGACGT 483380 32 100.0 34 ................................ CCATGACCGAACCCGCCAAGAGCAACGGCATTGC 483446 32 100.0 33 ................................ TTGCCGGCCTGACCGCGCAGGCGCCGGCCGCGC 483511 32 100.0 34 ................................ GTCGACAAGAACGATGATTGGACCAAGCGTCAAA 483577 32 100.0 34 ................................ GCGGAAGCCATCAAGTCCCCTCCGGCCACAAGCC 483643 32 100.0 33 ................................ ACCAAGATCATGCAGCGCCGGGCGCGGAACCCG 483708 32 100.0 34 ................................ CGCCCGTCATCTGCTGAGGTCTCGCGAGCCGAGG 483774 32 100.0 36 ................................ AACGAGGGCGCGCTCGACCAGCCGCTACGCTGGCGC 483842 32 90.6 33 ............T....C........A..... CGGCCTGCGCGAGCGGGCTTTTCATGCGCGCAA 483907 32 75.0 0 .......T..............C.CC..CGCA | A [483928] ========== ====== ====== ====== ================================ ==================================== ================== 30 32 98.9 34 GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC # Left flank : CCTGGTTCTGGAAATAGGAGCGCGCCATGCTGGTTCTCGTGACATACGATGTCAGCACCGTCAGTGAGGGCGGGCCCGGGCGGTTGCGGCGGGTGGCGCGCGCCTGCCAGGACTATGGCCAGCGGGTGCAGAACTCCGTCTTTGAGGTCGAGGTCGATCCGGCCCTGTGGACCAAGCTCAAGGCGCGGCTGGAGAGCATCATCGACCCGCGTAGCGACAGTCTGCGCTACTATCATCTGGGCGCCAACTGGCAGCGCCGGGTGGAGCATGTGGGGGCAAAACCGGCAGCGGATCTCAACGGGCCGCTGATCGTCTAGTCGCCTGCGCGAACCTGAAGCGTGCCGAAAAAACCCGGCAGGTTCGCGCGGGAAACAGCTCATTGAAATTGTTAATCTTTTTTAGGGTCAGCAAGCTGCTGGCGCGGCTGCGGGATGCGGCGCCTTGCAGTTCGCGCCGGAGCTCGGGTTTCTTCTGCAAAAACCGCATGATACGAGCAGCCA # Right flank : ACTGCCGCCATCCTCTTTCCGTGCTGCCTGGTCACGTCCCGGTTGCGTTCTTGGGCGTTATGCGGCGCGCAACGGCTGTGCTATCTCTTGAGGAGAAATAGACACAGAACGACATAAAACTCCGGGGGGAGGGAGATCATGGGCACGGGATCGCTCAGGCGCGTAGCGGATGCATCGTCCGTCGATGCGGAGTTCGGGCCATGGTTGTCGCAGGCCGCGATCCTCATCGTCGACGACGAGCCCGGCATGCGCAATTTCCTGGTGAGGACGCTGGCGCCGCATTGCAAGCATATCGCGGAAGCGGAGGATGCTGCGGCCGCATCCGCGATGCTGGATCGGCATCATTTCGATGTGGTGATCCTCGACAACATCATGCCGGGCAAGACCGGCGTCGAATGGCTCGCCGAACAGCGGGAGATCGGCTTTTTCGCCCACGCGATTCTGATGACCGCCTATGCGGACCTGGAAACGGCGATCCAGGCGCTGCGGGCCGGTGCCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.50,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19595-20423 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQE01000004.1 Stappia indica strain SBBC 49 NODE_4_length_715304_cov_39.9782_ID_287, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 19595 32 100.0 34 ................................ GACCCTAGAACATTGGACGTGATGTAACCGCCGC 19661 32 100.0 35 ................................ TTCGCGGCCCCGCCAATGCTCCTGCAGATCGTGCG 19728 32 100.0 33 ................................ CCCGGATCACCACGGGCGGCGTCGTGATGATCG 19793 32 100.0 34 ................................ ACATCCACCAGGAGACAAAGACCATGAAGATCGA 19859 32 100.0 35 ................................ GCCTTACCTTGAGACAGTAGCGGCAGGGTTTCCGC 19926 32 100.0 34 ................................ AACGAGGGCGCGCTCGACCAGCCGCTGCGCTGGC 19992 32 100.0 34 ................................ CTGGTTACCATGCGGCCGACCACCGCGGGCAAGC 20058 32 96.9 34 .........C...................... GGCGACGGGGCGACCAAATGGGCGCGCTCGGTCG C [20068] 20125 32 96.9 34 .......T........................ TGAACGTCGGAATAAGTAAGGACGGCAGCGCGCT 20191 32 100.0 37 ................................ GTGTCGTTGTCGGCGAACACCACCAGCTCCTCGCATT 20260 31 90.6 33 ...........-.......T.C.......... TTCACGACGCCGATCAGCTCGTTCGCCGGCACC 20324 32 93.8 35 .........C...........C.......... GACGATGGCGACTTGGACATGGCGTTCCACGAGCT 20391 32 75.0 0 .........C...........C..C.A.CGTT | A [20405] ========== ====== ====== ====== ================================ ===================================== ================== 13 32 96.4 34 GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC # Left flank : GGCGGTGCCAGCCTGTTGCAGCGCGGGGACGAACTCGGTCGGCTCAAGCCCGGATATCTTGCCGACCTCGTCGGCTTTCCCGGCGACATCCTGACGATGGAGGCCGGCGAGCTGAGGCATCTGGAGGCGCGCCTCGCCCTTGTCGGCGGGCAGGTCGTCCTGCGGCAGGCCTAGCCCTGTGCGGCCTCGCCCCCGCCGCCTCCGCATCATTTCCGGGGTGGCGCGCTACTATAATCTGGGCTCCAATTGGCATCGGCGGGTGGGGCAGGTGGGGGCGAAGCCGGCAAGGGATCTCAACAGGCCGATGATCGTCTGGTCGCTTCCGCGAACCTCAAGCGTGCCGAAAAAGCCCGGCAGGTTCGCGCAAGCAACAACGCATTGAAAATTTTGCTCTTTTTTTGACGTCATCAGTCTGTTGGCGCGGCTGCGGGATATAGCGCCTCGCAGTTCGCGCTGGAACTCCGGTTTCTTCTGAAAAAACCGCATGATACGAGGAGCCA # Right flank : TCGTCTGCGCCGCCGCCTGCCTTGCTCGCCTTGCGGATGCGGCTGAAGCTCATGGCGATATGGGCGCGCCGCACATGAGCGGCGGCGGCAAGGTCGCCATGCTCCACCGCCTCGGTGATGTCGGTCACCTCGCGCTGGAAGGTGGTGAACTCCGTATGGATCAGCTCCTCGAAATTCTTCAGCCGTGAGGCGGTCTTCAGCCAGATCCGCGCGGTCTGGTAATACAGCCGCTCGCTGATCTCGCGCAGCGGCGCGTTGGTCGTCAGCGCGTTGAACAGATGGAAGAATTCCATGTTGATCCGCGAGAAGGTGCGCGGGTCGCCCTCATGCACCATCTCGTCGCAGCGCGCGCGGATCTCGCGGAAGCGCGCGATCAGCGCCGCATCCACCGGGGTCGGCGACAGCTTGCCGACCAGTTCGGCCAGCTCCACCCGCAGCTCGTAGACCTGCGCCAGCGCGTCGACCTCGATGTCGGTGACGATGGTGCCGACCCCGTGCAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //