Array 1 6858-5349 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDI01000011.1 Riemerella anatipestifer strain RCAD0121 ZB100010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 6857 47 100.0 30 ............................................... TTCCGAATTTAAGTGTAGTTCTTCCAATTC 6780 47 100.0 30 ............................................... TATTGCATAAAAACAATAATGATACATTTT 6703 47 100.0 30 ............................................... CATATTATGCCAAACGCCGCGTTCAAATTC 6626 47 100.0 30 ............................................... TGATAAGATAGAACGACTAAATGCTTGGGA 6549 47 100.0 30 ............................................... ACCCCAGATATTGGAAAAGAAAACTTGTTA 6472 47 100.0 30 ............................................... TGTGGCGTTGGCGTTTCAATAAAAATAGGC 6395 47 100.0 30 ............................................... GGTATCTGCGGGACTAATGAGGTAAATTAT 6318 47 100.0 30 ............................................... AAAGGTTAAAAATATTTGTACAATTAGAAA 6241 47 100.0 30 ............................................... AACTGATGCCTCGCTATCCCCCTCAACATA 6164 47 100.0 30 ............................................... ATAGTGCAAATATATAAGATATTTTCTAAT 6087 47 100.0 30 ............................................... TTTCCTGCCCTTAATAATTTTAGCGATAAA 6010 47 100.0 30 ............................................... TAACCCGCCAAATCGCCTGTTTGGAAAATA 5933 47 100.0 30 ............................................... TATTGTTGCTAAATGCTCTTAGTATAAAGA 5856 47 100.0 30 ............................................... ACACGCACGAGGCGTAATTTATGTACGAAA 5779 47 100.0 30 ............................................... TCTGGCGGCGCCACCCAAAAAAAGTTGTCG 5702 47 97.9 30 ..................A............................ GCCTGTGCCTGTGCGTATGAGTTAGAGGCT 5625 47 100.0 30 ............................................... GTGTCGCTAAACTTTAAATTTTCGTGATAT 5548 47 100.0 30 ............................................... GCTATGGGTGCGTGGCTAGACTTTGTAGAA 5471 47 100.0 29 ............................................... GCACAATTCACACTTAAAAAACAAAATAG 5395 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 20 47 99.9 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACCGGAGAAAAAAGACAACTATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATCGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGCGTAAAGCGGCTCAGCTATTCCGAAAACGGCTTGAAGACGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGCCCAAGTCGTGAAAATGCAGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCACGGTAAGGTGGCTATCATGAGTATTACAGATAAACAGTTTGGAGATATAGAAATTTTCTTTGCGAGAGCTAAAGAAGAACCCAAACCAACCTATCAGCAATTAGAACTTTTTTAGAAACAGAAAAAAGGATTTACTAAAGTAGAAATAGACAAGAAATAGTGAAAAATCTAATCCTAATAAAAAGCAAAACCCATTGAAAAACAACGGGTTTATTTTTTGAG # Right flank : TATGCGGTTTGTCATCACTAGAAAACAGATGGCTTAAATAACTTCTATCTAGTAACAGGTCTTTTGTTAGGTCTTTTCGTTTAATACCTAGCTCTTTTATCTGTTCCTGTATCCACGAGGTATGTATATCTTCTATTTTCATAATATTATTTTAAGAAGATGTATATCATTCCTGCTAAAGCTAAAAAATAAATATTATCTGCTCTAAAGATAAACTAAATCTAATAGTTATATCTTGCTCAAATGGTTCTTTCGAGAAAATATTTTTAATCAATTTTATAAATTCTTTCATTTGAAAAAATATTTCTAAATTTGCCTTTAGAAGTAAGGGGGACAAAGCCTCCTTTGTTTCAGGATATAACAGACTGGGAATTTTCTGTTTCATCTCGGCTTTAAGTTTCGCAACAAACTTAAAACCTTTTTCATTTTCATAAACTGATTTTGAACTCAAAATCTAACTTCATAAAAAATAAATTTAAGCTACAAACTACCACAAAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 11685-12632 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDI01000010.1 Riemerella anatipestifer strain RCAD0121 ZB100009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 11685 36 94.4 30 .................G........C......... GCCTCCGAGCCTAATTTGAGAAAAGGTCTA 11751 36 100.0 30 .................................... TTTGTTAAATCAAATAATTTATATGCTAAT 11817 36 100.0 30 .................................... ATCGGTAATGGTCTATAATTAGATTGTGAG 11883 36 100.0 30 .................................... AACCACGGTGTATTTGTATGGCTGTTGTTC 11949 36 100.0 30 .................................... ACCCTCAGCAATATGCCAAATACTTCCAAA 12015 35 83.3 80 ................-.....T.T.C.T...G... TCCGCTGAAAACTACAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACCGATTTTTCGCCCATCAAACTTTGACAAAT C,A [12037,12047] 12132 35 83.3 80 ................-.....T.T.C.T...G... TCTGCTGAAAATACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTCGGCATCTTTCAAAATAGGCTGGAATGT C,A [12154,12164] 12249 35 80.6 80 ................-.....T.T.C.T..A...A CTCCGCTGAAACTACAACGAAGCTGTGAGTAAACTGAGAGCAGTCCCAACCAGATGTAACGACAGGAAAAAAAGAAATAA C [12271] 12365 35 83.3 80 ................-.....TT..C.T...G... TCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACCGATTTTTCGCCCATCAAACTTTGACAAAT C,A [12390,12397] 12482 35 83.3 80 ................-.....T.T.C.T...G... TCTGCTGAAAATACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACGTATCATCTAGCCGACCTAAAAAATGACTT C,A [12504,12514] 12597 36 88.9 0 ...........T.......C......C........A | ========== ====== ====== ====== ==================================== ================================================================================ ================== 11 36 90.6 55 GTTGTGAATACCCTTCAAAATGAGAGTAGTCCCAAC # Left flank : CATTAAAATAGACGGCGACAATCCTAAAAATGGCATCGTCTTTAAAAACCTAGACAACCAAAGTGAGGTCAAGTTGGCTAAAGATAGTATCGTAATCAACGAGCCATCAAGGGTGCTTATCCTTGTGCCTTCGGATTTAGAAGCGGGTAACTATGAACTCAGCATCACTACGCAAAGCAGTAAAGGCACTACCTTACTGAAAGAACCTCGCACCGAAACACTAAGCACACCTATTACTATTGTGTAGCGTGTTTTTGGCACTTCTAAATAAAGACCGCCCTTCCTTAGTACTAAGGAAGGGCGGTCGCTTTATAAGAGGAAGCTACTTCACTGCCTAAGGCGAAGGCTCTTCTCTCGGTAAGGAGAAGAGCCTTCCCTCGTACGAAGGAACCGACTTCGTCTGTACTAAGGAAGTGAGGGGTTTTCTGTAATAGAATAAATAGAAAGCAAAATCCCTACTCTGTACCATACAAAGCAGGGATTTTTTTATGCCCTTAGGT # Right flank : AACTTACACACATAGGAGATTTGGCGTTTCGTGGTTGTGAATACCCTTCAAATGCTGTGCATTATCGTTATGATAGGGTATTGTCTTTTTTTGGGTGCTTGTTTTATCTCGGTGTTTCAAAGAACGCTTTTCTTTACATCGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACATCTGATGCAGCTGCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGTTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGCTCTGGGAGTTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATGCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGA # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-1.77, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGTAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //