Array 1 984885-986071 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025745.1 Salmonella enterica strain MFDS1004024 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 984885 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 984946 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 985007 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 985068 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 985129 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 985190 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 985251 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 985312 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 985373 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 985434 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 985495 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 985556 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 985617 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 985678 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 985739 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 985800 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 985861 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 985922 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 985983 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 986044 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1002242-1003921 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025745.1 Salmonella enterica strain MFDS1004024 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1002242 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 1002303 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 1002364 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 1002425 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 1002486 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 1002547 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 1002608 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 1002669 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 1002730 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 1002791 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 1002852 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 1002913 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 1002975 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 1003037 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 1003098 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 1003159 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 1003220 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 1003281 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 1003342 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 1003403 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 1003464 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 1003526 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1003587 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1003648 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 1003709 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 1003770 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1003831 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1003892 29 93.1 0 A..............A............. | A [1003918] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //