Array 1 289875-292549 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZG01000013.1 Streptococcus equinus ATCC 33317 contig00025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 289875 36 100.0 30 .................................... AGGCAACATATAATTGCGAAGTTTGGGAAT 289941 36 100.0 30 .................................... ATGGCTAAGAAGAAAGGAATATTAAAATAA 290007 36 100.0 30 .................................... AACAGTATTGACTACATCCTCGATGTTATC 290073 36 100.0 30 .................................... CGGAAAAAATTGAAAAAATTGATAAAAAGT 290139 36 100.0 30 .................................... TAAAATAGCTCAAATTATCGAGCTTTCTCT 290205 36 100.0 31 .................................... CCGTCATTGTTCTTGAATGTGAAACCGTTAT 290272 36 100.0 30 .................................... TTATGACAATGGAATTGTTGTTCGCTGTGG 290338 36 100.0 29 .................................... GGTCTTTGATGTCCAATTCTTCATCGTTA 290403 36 100.0 30 .................................... GCCGAATAAGGCTTAGATAGCGTGGGTCTA 290469 36 100.0 30 .................................... AGTTCATCGGCAATTATAGCGATTTGGCTT 290535 36 100.0 30 .................................... TGGAAATATTTATGAGAACCCAGAATTGTT 290601 36 100.0 30 .................................... CAGCATAGATCCAGACACCTATCAAATGAC 290667 36 100.0 30 .................................... GGAAACAACTTTTAATCGCGTCTTTTGGTT 290733 36 100.0 30 .................................... GCAACAAAAAAAGCCCTTGGAAAAATCCAA 290799 36 100.0 30 .................................... CAGTCAAGATTTTAGCGGTACGAATTGGGT 290865 36 100.0 30 .................................... ACCTGACACGACTGGCAGACGCGTCTGGAT 290931 36 100.0 30 .................................... GAAGGAGCAAGTAAGCGATAACCGAGCTCT 290997 36 100.0 30 .................................... ACGTGCCGAGAATGAGAAGTTTAACGAAAT 291063 36 100.0 30 .................................... ATCCAAATTCTAAGCTACATCAAAGAGCAT 291129 36 100.0 30 .................................... CGAACTAAGAACGCACCTTTTACCTGTTTT 291195 36 100.0 30 .................................... AACCACTTAGGAACGGTGGCAAGGGAAACT 291261 36 100.0 29 .................................... GGCATCGCAAAATCTGTTACAGATGGCAT 291326 36 100.0 30 .................................... TAGAGCTTGCTTGCGAAGCGATGTCCATGT 291392 36 100.0 30 .................................... TTGGCTTCGCTTTCTTTGCCTTCAGCTTGC 291458 36 100.0 30 .................................... TTATTCTTTTACTACACTTCAGATTATCTT 291524 36 100.0 30 .................................... GAACCAGATATTGAGGTGACGTGGTACGAA 291590 36 100.0 30 .................................... TAACGTCCCAGCAAGCGTCAAACCAACCTT 291656 36 100.0 30 .................................... CAGACCAAGCACTCACACAGCAACAGCTTA 291722 36 100.0 30 .................................... AGCGGAATATAAAAAAATCATGCAAAAGAA 291788 36 100.0 30 .................................... GCGTTCACGTCAAGCTATGAAACAAATGAA 291854 36 100.0 30 .................................... ATGGTGGCAAAACAAGCGTTAGCCCACTCA 291920 36 100.0 30 .................................... TGTTTCAGACACAGAAGGCAAATTTTTGTA 291986 36 100.0 30 .................................... AATGAAGAAGCCTATTCAAGCGCAAGGGTC 292052 36 100.0 30 .................................... TGACGACTTCCTGTTACTCGCCACAAAAGC 292118 36 100.0 30 .................................... TCAACAAGTTCATATTCCGGACATCTCATA 292184 36 97.2 30 ...........A........................ GATTTTAAGATACGTTCGTCATCTGCGCCA 292250 36 100.0 30 .................................... CCAAACAGCTAACTTTGCAGCAACTACAGC 292316 36 100.0 30 .................................... CGGCTTGATAGTGATTGATGGTCATTAATT 292382 36 100.0 30 .................................... ATTGCTAATGATTTCAGCAGAAGCGGTTCA 292448 36 100.0 30 .................................... AGGTGCAACACCTGCGTGGGATGACCCATA 292514 36 80.6 0 ..............C.........AAA...TCT... | ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.5 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AATTTTTCATAAAGAAGACGAAGGTTTTTGGGTAGAATTTCCAGGATTCGGCGGTGGAACCGAAGGTAAAGATATCGAGGAAGCTATGAAGAATGCTCGTGAAATGCTTGAGAGTTCGTTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAATGAATTATCAGTTGAAGATGGCTTTGTTTCTTTAATTCAGGCAGACCCATCTCCCTATTTAAAGAGTACAAAAGCTATTCGAAAAAATGTGACAGTTCCTGAGTGGTTAGTTAGATTAGCTGATCGTGAACATGTTAATTATTCAGAGGTTTTAACTCAAGCTTTGGAGAAAAAATTGCAACTGTAAAATGTGTGAGTGCTTAGAAACGTTGAAATAACAAGGATTTTAAGGTATAATAGAACTAACATTAAGGAGCTGTTCGAGGCTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATTGGTCCACGAG # Right flank : CTAAAGCTTTAGTGAAAATCACTTTCAATGTTTTTCAAAACTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 293157-294313 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZG01000013.1 Streptococcus equinus ATCC 33317 contig00025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 293157 36 100.0 30 .................................... CAAGCTGATTTCATCACCAAGTGACAAGAG 293223 36 100.0 30 .................................... TTTTGGAGTTCCTCATTTCTATTTTAAATT 293289 36 100.0 30 .................................... GGCGGAAGAGGAGCAAGCCTAGGTAAGACG 293355 36 100.0 30 .................................... CGCTGAAAATAAAAAAGGCCACGAAGTTAA 293421 36 100.0 30 .................................... TAACGAAATCGTTTTAGACATCGCTTCGAA 293487 36 100.0 30 .................................... ATAATCAATAAACCAGCGGTAAACTTCCTC 293553 36 100.0 30 .................................... ACCAAAGACTGTTTCACCAAGTTCTGTGTT 293619 36 100.0 30 .................................... TTTGCCATATCGACTTCTAGCACTGAGCCC 293685 36 100.0 30 .................................... CACACGAGTAGCAAGCTACGGCTATGCAAA 293751 36 100.0 31 .................................... GGTGCTAGTACGTTAATTACACAGGTGGACT 293818 36 100.0 30 .................................... ATCAAATAATAAATATATAAATAGCAGTCT 293884 36 100.0 30 .................................... CTTGTGGAAGATATTCTTCAGACTATTCGG 293950 36 100.0 30 .................................... GATTGACATAGTAGAGCGAAAAGTGTTGCG 294016 36 100.0 29 .................................... TTGCAGCAAGCGAAATTTACACAATGCTT 294081 36 100.0 29 .................................... CAAGAAAATGGTTGATGTGACCAACGAAA 294146 36 100.0 30 .................................... CTAAAATCAACAGTATCAATAGATTCTTCT 294212 36 100.0 30 .................................... TACGACCATCTCTGTAATCGCTGGGATAAA 294278 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCCCTTTGGTTTGGGGAATAAAATAATTAAATAAGGAATCATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGATAAAAATGGTCCACGAG # Right flank : CTTGTGGCTACTAAATATGAATATACCAAAACCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGCGATGAGTTGAGTTTTTATTATCTTCGCTTAAATCATAGCGCTTTCTGTGTAATTTGTAAAATGATTTGCGGTAGCTGATTTTAGCGATATTTATCGTGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAATTACACAGCTAAAGATGGTGAAACTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //