Array 1 421504-422836 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012047.1 Tetragenococcus halophilus strain MJ4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 421504 36 100.0 35 .................................... CTAAGGAAAGTATTCCCTTTCACGTCTAATACACT 421575 36 100.0 35 .................................... TCACTCACTCCATTCCTCGACCGTGCCATCTACAA 421646 36 97.2 36 ...................C................ TAAGTTCTTCCACTGATTTATCTTTGTACATTTCAT 421718 36 97.2 40 ...................C................ CCTAGCAACATCAGCACGCTCATCTGTCCCGCTATATAAT 421794 36 97.2 36 ...................C................ CGGCAGGCGTTTGACCAGCCAAAGCAATAAGTTCCT 421866 36 97.2 37 ...................C................ TCCTTGAGGAAATTTATTCAAGAGTTGATAGGAAGTT 421939 36 97.2 33 ...................C................ TCTGCTCCACTAAAATTATTCGGTGTGATTTCT 422008 36 97.2 36 ...................C................ CTGTTTGATATCTGTAATAAACGGGCTGTTTTACAG 422080 36 100.0 35 .................................... ATTCATTTTAATTTCTCCTCTCTTTAACTTTCTAA 422151 36 100.0 35 .................................... ATTCATTTTAATTTCTCCTCTCTTTAACTTTCTAA 422222 36 100.0 35 .................................... TTCGAAATCGATGTTTAGGTGCATCTCAGCATTTC 422293 36 100.0 37 .................................... AAAAAGAAGTTAATTACGATTTGGACTGTGTCAATCT 422366 36 100.0 35 .................................... TTCGAAATCGATGTTTAGGTGCATCTCAGCATTTC 422437 36 100.0 37 .................................... AAAAAGAAGTTAATTACGATTTGGACTGTGTCAATCT 422510 36 100.0 38 .................................... TATCTTCTTTTATGTTATTCATTCTTTATCTTCCTCTC 422584 36 100.0 37 .................................... TTTAGTAAATCGTTTATTTCATTTGTTAATACTTTCA 422657 36 100.0 36 .................................... GTCCGGGTCTAAGTATTCTATGACCGTGTCTATTAC 422729 36 100.0 35 .................................... TAAATTACTTTTTGAAGTAAATCCATATTCACTAG 422800 36 86.1 0 ...............T..CG.....A.........T | T [422830] ========== ====== ====== ====== ==================================== ======================================== ================== 19 36 98.4 36 AATAGATACCTAACCCCATTATTAGGGGACGAGAAC # Left flank : TTTGAATACAGAGGGATTCGAAGACGTCATATTAAAATTACAATATTCTCTAAAAAAAGCAGGGAACGAGTTAAATACAGATCGATATTTAAGTCTGCCGCTTTATGCTGAAATTATTCGTATTATTCAACCTGATAGTTCTTTATTAAAACTAATTGATAAAGTAAATGGGGTAAATACTTTTAGAAATCAAGTTGCACATGGATTTAAGCCAATTAATATGAAAAATTCTAGAGTGAAAGATCTAGCAGAAACTTGTTGGATGCTATTATTAATCGTTAATGATGTAGATGAAAAATGGCGTTCCTATTTTGAGGATAAAAATAAAGTTTTTAAAGAAATGGTTGGTTATTGAGCAGTTTTCTTGTAATAGAGAGTATTCTCTCAAATAATTGTCAAATTGTGACCAAGGATTGAGCTTTAGAAGTAGTTTATGGTCAGTTTATGGACTAATGAAAAGTATTCTTATGGCTGATATAAAAGCTTTTATGATATTATGT # Right flank : TTAATATAATGTTTGAATCAATATAGTGAGGAGTAAATATAATGAGAGATTGTATATATGTTGAGCACCAAAATTTTGTTTCTGTTGTAACTAATAGCTTTAAATTCGTTAATGTTGTTTCAAAGGAAACTACTTATATACCTTTTTCAGAAATTGAATGTTTGATTTTTGAGAATGAACTTAGCTATTTTTCTAAAAAAATGGTGACTAAATGTATGGAAGAAAATATAGCGCTATTATTCTGTGATAAGAAACATTCACCAGTAACCATGCTTACTAATGATTTTGGTCATAGTAAGCGGTTAAAAAGGTTAAATCTCCAAATGTCTTTGGGTAATAAAGTGAAAAAACGTTTATGGAGGAAGATAGTTATTGGGAAAATTAATAACCAGGCGGTAAACTTGCAGTTGCTGACTGAAAATAATGATATGGGGAAAATGTTGGTCCTTGCTTCAAAGCAGGTAGATGAAGGAGATACTAAAAATCGAGAAGCTTATGCT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGATACCTAACCCCATTATTAGGGGACGAGAAC # Alternate repeat : AATAGATACCTAACCCCATCATTAGGGGACGAGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 494575-495806 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012047.1 Tetragenococcus halophilus strain MJ4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 494575 32 100.0 34 ................................ TTGAAAGCGATCGTCTGGTACTGTATAAACACAA 494641 32 100.0 34 ................................ CACTTTTATAAGTGTCGTGAGTGGCTGTATTTTT 494707 32 100.0 35 ................................ AAGACGCTAGAGATACCGGAGAAGACTATTACCTT 494774 32 100.0 35 ................................ ATTTGAACTTGTGTCCATTTAATCATGTTACTTAC 494841 32 100.0 35 ................................ ACTTTTCCAAATACTTTTTTGTTATTTAATTCAAC 494908 32 100.0 36 ................................ ATCCATCGAATGGGTAAAACTTAACCACGGCACCCT 494976 32 100.0 34 ................................ CATAGCGTCAAGATCTGTGTCTGGAAAGACTTCT 495042 32 100.0 35 ................................ TCTTTATACTTCCAAAATGAGTGGTGGGGCTTAGA 495109 32 100.0 33 ................................ TTTTAACTTTAATGTGAGCTAGCCCCAAACCCG 495174 32 100.0 33 ................................ CTGCTGGTTGAATACGAATTCTTTTTGCTCCGA 495239 32 100.0 35 ................................ TGTTGCGTGCTAGCAGATTGGCTACTACCGCTATT 495306 32 100.0 34 ................................ AAACTATTTGAACCAAAAAATACACAAGATATGA 495372 32 100.0 36 ................................ AACATGGAAGAATTTATCGAAGAGAATCTCACAGAG 495440 32 100.0 35 ................................ TATTTTTTGGAAAATGTCTAATTCTGCTGCTGTTG 495507 32 100.0 36 ................................ AATGGTCATGTTGGAATCACATCGAATTGAGGGGTT 495575 32 100.0 35 ................................ TCACCCCCTTTCGTTGCTTCCTCGTAGTTTTTGGT 495642 32 100.0 34 ................................ AATAAATTGAATACTGTCATTGATTCCCTCTCCT 495708 32 100.0 35 ................................ GTCTTTACCATCTAACTTACAAATGAAAGGAAAGA 495775 32 68.8 0 .........C..G...A.A..AC.G.C...TC | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 98.4 35 GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Left flank : CTCCACGAAAAACAAAGTTGATAAAGTACGTGCAAGAAGCTAGTATAAAATATAATTTTAACGGTTTATGGATATTTAAGTAGGAAACTATAACTTTTAAACAGTGGACGGATTAAAAGTTCTCAGTTCATTATATTTGGAATTTTTTTAAAAGGATAAGCTGGGTACTTTCTATTTTAGTTAATGCTAATAAACGATTTTAATCCCTATATTTAATGCGGAGTATAAATATATATATAATTAAAAAGTTGAATTAACAGTAATAATTTATACTTTATTTATTGATGAGAACCTGGCAAAATGTACATAAGAGGAAAAGAATAAATAATAGGTGTTGCTTCTCTATGGACTATTTATCATTTACGCGAGTCGAGATCACTCATAAATCACTAAGTTGTCTCGCACCAAATAGCATTGTTTGATAAAAATGAGCCCTTATTTTTTCAACAATGTTTAGTTATTTTTTTATTAAAATGTTTTAAAACCGCGTGTGTTACGCG # Right flank : CTCAATTCTTACTATTCCAGTTTATAGAATGCTTTTTAACTTTATCTGATGTTGGGTACAAATTTAATTACACTCTGATGTGAAATACAAATCTATAACATTTGACATAAAGTCTCTCCGATGTGTGAAGCTATTATATGAATTTCTTGATCAGCTTTTTACTTAAGACTTTTGTTTTAAACTCAATTTCATAAAGAAAAAAACGTAATTTTAAACCACTTGTCTATAAACACTTCCTTTATAAAAAGAATGGGATAAAATAAAAACTGGCAGCAAGGTACTCACCACCTGTCTTTTATTCAAATGAATTTTGTAGCTAGTTTATGAATAAAACCTATTTATTCGTCAACAATACTAAATGATAATTTATAATGGGAGATAATTGATCTATCAAGTGTTGTGATGATTAACGTTTGTTTATTTTCTAAGCCTAATTGTTTTTACAATACAATTTGGAATACGAGTAGCTTTAGAATTTTCCCACTGAAGTAATACGTCTT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 506911-508284 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012047.1 Tetragenococcus halophilus strain MJ4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 506911 32 100.0 35 ................................ CCGTGATAATTTGGATCGCCTGGACGATAGCCTGA 506978 32 100.0 35 ................................ AACTGTAAAGCCTTGAATTACGCCACCTAAAATCG 507045 32 100.0 34 ................................ AGATTTTTGATATAAAGTAACTAAGGCTGTAATT 507111 32 100.0 35 ................................ AGGACGTGACAGTAGAAGCTATCATAATGGGAGCA 507178 32 100.0 35 ................................ TAAATGATGACGGTGGGAAAGAATTTATCCCTAAA 507245 32 100.0 34 ................................ GAAAATATGGGCTTTACAGCACAAGAAACAGAAG 507311 32 100.0 35 ................................ TTATAGTGGCCAACGTCGTTATGTCGCTATGACAA 507378 32 100.0 36 ................................ GGTGTAACTCTCGACTATTTACATGGTAGAGAAGCC 507446 32 100.0 34 ................................ ACAAAGTTTAGAGATAGATATTTGATAAACTGCT 507512 32 100.0 36 ................................ ATCTGTTGCTACGCTTCAAGGATTCTTGGACGACGT 507580 32 100.0 34 ................................ ACAAAGTTTAGAGATAGATATTTGATAAACTGCT 507646 32 100.0 36 ................................ ATCTGTTGCTACGCTTCAAGGATTCTTGGACGACGT 507714 32 100.0 34 ................................ GCTTTCGAGCGCGACTTGATACGTGCCACTAGCG 507780 32 100.0 35 ................................ AATACGAGGGCCATCGGTTTAGATACGAAACAAAA 507847 32 100.0 36 ................................ CGATGAGAAAATTTACAAAAGCATTGACCAAAAACA 507915 32 100.0 36 ................................ TCAAAAACCAGATAGTGAGGGAGGTACGCAAGGCAA 507983 32 100.0 34 ................................ ATTGTTTAATATTAAAGACGGCGTACAATATATC 508049 32 100.0 36 ................................ AACATCTGAACCAGCATTTGATGGAAATACTTGACA 508117 32 100.0 34 ................................ AATCTGAGGCAGAAGCCGAATGGTCGGACTGGAA 508183 32 100.0 35 ................................ TACAATAAATGTAGCGGTTTCTTTATTATTTGCCA 508250 32 90.6 0 ...............G............C..G | T,G,T [508274,508277,508280] ========== ====== ====== ====== ================================ ==================================== ================== 21 32 99.6 35 GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Left flank : ATCAATCGTAAGACATCAGAAATGATGCTTACAAATATATTTTACGAGGAGGTATGCTTATGATGGTTTTGGTTACTTATGATGTAAATACAGAAACGAAGCAAGGTAGAAAGCGTTTGAGACATGTAGCTAACTTATGTGTTGATTACGGACAACGGGTGCAAAATTCTGTTTTTGAATGTTCAGTTGTTCCAGCAGAATTTGTCGAACTAAAAGGAAAATTAGCCAATATTATTAATCCGGAGCTTGACAGTATTCGTTTTTATTTGTTAGGAAAAAACTGGCAGAACAGAGTAGAACAAATCGGAAATAATGATAGTTATGATCCAGATAAAGATGTTTTATTGTTGTAAATTAATTTTGTGCGAGTCGACGTTACACATAAATTACTAAGTCGGTTCGCGAGAAATTGTTGTTATTTTGGAGAAATGAGTACTATTTTTATTATTTATTAACGAATTTCTTCATTTAAAATGGAGAAAAACCGCATGACTTCCGCG # Right flank : GTTTATTGAGGTTGAATAAAAAATCGTCTTTTGGGGGAAACACTAAGTTGTTTTTCAACCTCAATTTTCTTCGATTTTCCCTTATTATTACTCAAGTTTCGCACATAAAAAAATAGGATAATCCATTGCCAGATCTGGGCCTGCATTGAATTCAATCGCCTTCTTGACTTTTTTAACAAAAGATACAAAAAGAACTCGCTTTGTTTTATAATTGATTTACCACAAATCAAAGACAAAGGAGTTCTTGCCCTTATGATACACTTAAAAGCCATCAAAAATCAATTACCAAATGAAGTAAAAGCGACTTTTTCCGAATTAAAGGTGCCTTCCTTTTTGCGTCAAGCTCACATCCACAAGCAAAAAGGCTATTCCGTCGCAGTCATCTTTACTTTTCTTTTTTCTTTAGTCTTTAAAGGCAAATCGCTTCATCAAGTCCTTTCTGGACGTGAGGCGGACCAATGGATGAAAAAAGATACGGTCTATCGTTTGATGAACGATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //