Array 1 75043-75671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIN010000003.1 Listeria seeligeri strain FSL W9-1027 NODE_3_length_432925_cov_52.180886, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 75043 36 100.0 30 .................................... AAAGCGACGCATGTTCTCTAGCGCTATATA 75109 36 100.0 30 .................................... TAAAAGAATATGTGCAACCTGATTTATTAG 75175 36 100.0 30 .................................... TCAGAAGTATCTTAATACCTCTCTTAGAAG 75241 36 100.0 30 .................................... AATCAGATGAGTATGTTAATGCCTTTTACG 75307 36 100.0 30 .................................... CTAGACGGGTCAACAAGTATTAGCGAGGCA 75373 36 100.0 30 .................................... AGATTTACCACGACCGCCCGGCTTAGATTA 75439 36 100.0 30 .................................... TGGTGCTTATATCGTCAATGTTAACAGCGA 75505 36 100.0 30 .................................... CATGGAAGATGATGTGGCTGATTATTCCGA 75571 36 100.0 30 .................................... TACAACAGAGCGCATTTGATAGGGGTTCAA 75637 35 83.3 0 ..................T........-.A.TG..T | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.3 30 GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Left flank : CTGTTTTTTTAAGCTATCTTCTAACAATTGGGAGAGATTTATTTCTATTCTGTATTCTTCGCTTTTGTTAGGACTATTTTCAGGAAAATAAGATAAATTTTTTTTGAAACGATGATTTAAGAAATTTGAGATATTAAGTTTAGTGATATCTGAAACTTTTATTTCCCCACGTTCTTTTTCTTGTAATAATCCATGAAATAATTTTTTCATTTGTTTTTGTTCAGGACGACAAATAGTTTTGTTTACCACACTTTTGTAAAAAGAACTTTTTTTGTGATGCATGATTTGTTCTGTATTATCTTGCATTTCATTTTCATAAACTAACTTGCCCCCGTTTTTATCCCTAGAAATTAGTACTTTTTTTCTATCAACCTCTACTTTAGTAATTCTCATAGTTTTCACCTCAATGATTTTTTTCTCTCTTCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGCGTTTTTATACTTATCCACATTAGAC # Right flank : TTCCTACTTAATAATAGTAATTAAAACAACAAATGTAAAGGATATAATCAATATATTTAAATTTTGCACGAGAATGCAATCATTTTATTCATAAAGATCATATCATTTATAAGCTCTATTTTCCATTTTCTAAGGCTAATAAATAAAACTGCTGTACCTATGGATCTAAGGAAGACTTATGCACACAGTACAGCAACTTTTCAGCATAAAAACATTTAATTTATTGTAGCAATTTCTTGCGTAGTCACCAACCATCTTCCCGTGTCGTCTCGCACTAATTCCAAATCCAGTAGCACTTGATTTTCATTCTTCTTTTGCTTGTCGACTTGAAAAGTAGACAAGACTCGCACAGTTACTTGGCACTTTTCACCTTCTAAAAAGTAATGTCCTATTTCTTGTTTGGTTAAATTACTCTGTACTTTCACTACATTTTTAGAATCACTCGTTGTTTCCCCTTGTTGAAAGTAAGGAACCATTTCTGCCGTGATAAACGGAAGTAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 213272-212199 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIN010000002.1 Listeria seeligeri strain FSL W9-1027 NODE_2_length_457486_cov_74.491153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 213271 29 100.0 36 ............................. GCATTTGTAATATCAGCTATTAATTTATCCAAAGCT 213206 29 100.0 36 ............................. ACTGTAGTTGTGAATGACCAGTTGCTAAAATCCCGA 213141 29 100.0 38 ............................. ACAAAGAAGTTCCGGGCGACACAAGTATGGGACTGGCT 213074 29 100.0 36 ............................. AAAATTATTGACGCAGGTGTGAAGCTTATATTTGCG 213009 29 100.0 37 ............................. CTAAGTCCTTGCGATTATCCGGTAGCGGAAGTATAAA 212943 29 100.0 36 ............................. ACATATGTTTTTTCATGTTAGAATCCATGAAGCATT 212878 29 100.0 35 ............................. ATCTTCAAAGGTCAAGAAGTTGCCGACATCTCCAA 212814 29 100.0 37 ............................. CATATGATTATCATGAATCAGGATTTAAGAGATGTAA 212748 29 100.0 34 ............................. AAAAATAACCATCTGATCCACTTTAGCGAGCTGA 212685 29 100.0 35 ............................. CATGGATTTACTATGTGGGATTCTATCTTGTTAAT 212621 29 100.0 36 ............................. TGGAGCGAAAAAGAAGATGAGTTTATCAAAAAATAT 212556 29 100.0 36 ............................. TTGGCTAAACTAATCAATCCGTGGTTCGTATCTCTC 212491 29 100.0 38 ............................. TTGATAGCTCCTACCAAACCCGCTATTTTAGAATAAAC 212424 29 100.0 36 ............................. ATGATAAATCTCCCTCACTGAATCGAGGAAGATTAT 212359 29 100.0 36 ............................. ATATTATCAATTAACGCCATCACAATAGCAATTATC 212294 29 100.0 38 ............................. TAAGAACCGTTGACACCTGTGCTTGAGTAACCTAAACC 212227 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 98.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTTGACCTCCAATAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGCATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACAGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 223472-221900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIN010000002.1 Listeria seeligeri strain FSL W9-1027 NODE_2_length_457486_cov_74.491153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 223471 29 100.0 34 ............................. TTTTCAATATATAAACTTTATAATCAGCCTTCAA 223408 29 100.0 35 ............................. ACGATAGCATAAGCAAGAGCCTTATTTTTGTCGGT 223344 29 100.0 36 ............................. ACATCATTTAGAAATCATGTTGCGCGAGAAACCAGC 223279 29 100.0 34 ............................. TTCTGTCCTTTGCCTTTTTGACAATAGAGTCCCA 223216 29 100.0 39 ............................. AGTAGTATACTTATCGTAAACGGCTTTGGGTTTTAGTCC 223148 29 100.0 36 ............................. AAAAAAATATTGTCCTCGGAAATGTGATATAGTTCT 223083 29 100.0 36 ............................. ACTTAACAAGTCCTACCTTAACGGAGACTATTCACC 223018 29 100.0 37 ............................. TTGGTTGTCACTCCTATATACCGATTTGTTAGTTTTT 222952 29 100.0 35 ............................. GCGTTTAGTTTGTCAAATGTAGATCAAACAACAGC 222888 29 100.0 34 ............................. ACAGTCAAATAATTTATGAAGTCGCATTTCATGA 222825 29 100.0 38 ............................. AAAGCAGTTGAAAATGCTAGCTCTGAATATAAATCAGA 222758 29 100.0 34 ............................. GCTGATATGCTATGACATCGCCTAAAATGAGTTC 222695 29 100.0 34 ............................. CCAGATTCAGAAATGACCTGTACTGAATCGTTGA 222632 29 100.0 35 ............................. GTTTTTTGTAATGCCATTTAACTTTCTCTCCTTTC 222568 29 100.0 36 ............................. AATCAAAGTTGATATTGACCCCCAGACCAGACCAGT 222503 29 100.0 36 ............................. ATGCCACTCACATCTTGATTTATATCGCTCGATACT 222438 29 100.0 35 ............................. TACCATGCGTAAGTATTTCCTTCTGTATAGCCGCC 222374 29 100.0 34 ............................. ATAAAAAATGGAAAAGAGGAAAAACAATGACAAC 222311 29 100.0 34 ............................. CAATACCAGAAAAAGCACTAGACATTTTCCTAGT 222248 29 100.0 34 ............................. CTCGCTATCGTATTTGCTACTCTATTGTTCTGTA 222185 29 100.0 35 ............................. ACTTTTCTGGAGTCAGTACAACAGACTCTTCTTTC 222121 29 100.0 34 ............................. TCGCTTTCAACAACATGACCATGCCCACGCTTTT 222058 29 96.6 37 .................C........... ACTGTATTATACAGGAGCTCGTATAGGCGAAATAACG 221992 29 96.6 34 ........................C.... TATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 221929 29 86.2 0 ........C....C..A...........G | T [221902] ========== ====== ====== ====== ============================= ======================================= ================== 25 29 99.2 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCAGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGCATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACAGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCAAGTAGCACTATCATAAATTTTTCAGTCAAAAAAATTAAAAATCAAATTCTATACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATCATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACTGAGGGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATTGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 230237-229693 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIN010000002.1 Listeria seeligeri strain FSL W9-1027 NODE_2_length_457486_cov_74.491153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 230236 29 100.0 37 ............................. TTTGTTAAAATAAAAGAAGACTTGTACGAGTGCGATT 230170 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 230107 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 230043 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 229979 29 100.0 37 ............................. GTAACAAAGCTATAACGGAAGATTTAAATGAATTACG 229913 29 100.0 34 ............................. TACTGTAACTCATAAAACTTTCTTCTTGTAATTT 229850 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 229786 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 229721 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAACTGGGTCTCTGCTTTTTGTACGTTAACTTCTGTCGACCGATAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTAGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGATCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //