Array 1 88665-90218 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADICV010000021.1 Escherichia coli strain 50098 contig00021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88665 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 88726 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 88787 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 88848 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 88909 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 88970 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 89031 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 89092 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 89153 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 89214 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 89275 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 89336 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 89397 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 89458 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 89519 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 89580 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 89641 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 89702 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 89763 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 89824 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 89885 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 89946 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 90007 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 90068 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 90129 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 90190 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8950-9467 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADICV010000033.1 Escherichia coli strain 50098 contig00033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8950 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 9011 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 9072 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 9133 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 9194 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 9256 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9317 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9378 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 9439 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //