Array 1 70231-68583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWE010000003.1 Listeria seeligeri strain FSL L7-0835 NODE_3_length_279952_cov_45.034969, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 70230 29 100.0 36 ............................. TTGCTTCCGCTTGTAATCGTTCGAATCTCCATCAGT 70165 29 100.0 35 ............................. ACCAAAGAAGAAGTAGTTACGCCCGCATCGGAAGA 70101 29 100.0 36 ............................. ACTAGAAGGTGGAAAAACATATACCTTAGAAGAAAC 70036 29 100.0 34 ............................. TAAAGAGTATCTTCTGTTCTTGACCTGTCTCTGG 69973 29 100.0 36 ............................. AGCCTTCTTCTTCTAAGGTGAATTTTTCTGGTAGGT 69908 29 100.0 35 ............................. AAGTTCCCATGTTCATCTTCACTGATGGCTTCATT 69844 29 100.0 35 ............................. CTAGCTATTTCGGTAAACAATTGCATAGCTTCCGT 69780 29 100.0 36 ............................. ATTCCTGGGACTGATTATAGATGTAGATGTACAGCA 69715 29 100.0 36 ............................. GAAGAACTTCCACCAATATTTTCATCTGAGTATTCT 69650 29 100.0 37 ............................. AGAGATTACAGAGCAAAAGGATGCTTTAATCGCAGAA 69584 29 100.0 37 ............................. AATATTATATTGTGTAAAAATATCAGCTGTAGGTTCA 69518 29 100.0 33 ............................. TAGGCATGGTCGTTTCACTAATTGCAAGCTTTG 69456 29 100.0 35 ............................. TCCAGATCAAAGCAAATGGTATAAATAGAAGCACT 69392 29 100.0 37 ............................. GCTGCAGTATTATAAACAGTAGTTTCTGCTTCGCTTA 69326 29 100.0 34 ............................. TAATCTTCATCTAGTTTTATTCCCATCACCACAT 69263 29 96.6 37 ...........................C. TTTTTTGTCGGTCGCGATGAACAAGGGTTCTTTTTTT 69197 29 100.0 37 ............................. ACTAAATTATTTTATATGGGAGCATTAGATTTTATAA 69131 29 100.0 34 ............................. AAGCTTAAATCTGAAACATTCCAAGAACCATCCA 69068 29 100.0 37 ............................. ATATTAGATTCAAAAATTCCAATTACATTTTTCTCCG 69002 29 100.0 36 ............................. TCAACATCTGAACTCAAAGAAAAATTAGGGACTCCC 68937 29 100.0 35 ............................. CTTACAATGGCCGACAAAAAGAATTATTTATTTAC 68873 29 100.0 37 ............................. TAGTTCCTAGTTCTCTTTTTTCATCTGTAGTCAAAAC 68807 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 68742 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 68677 29 82.8 37 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCCC 68611 29 69.0 0 A......C..T....CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 26 29 97.8 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TAATGAACGATAAAGAATATGAAGGCTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGATGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAATACTGGAGATCGACAGAAACGTGGGAAGCCTTGGGAGAGAAAGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGA # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGCATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACAGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 82449-80024 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWE010000003.1 Listeria seeligeri strain FSL L7-0835 NODE_3_length_279952_cov_45.034969, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 82448 29 100.0 37 ............................. CTATTTCGAAGGTAATTGACGATGGAAAATTTGTTCA 82382 29 100.0 34 ............................. CTTTGCAACTTCGTCTTGTTTCACTTTGTATTTT 82319 29 100.0 37 ............................. ACCTATTTTACGTTCTGTTGGGTAATTGATAACTAGT 82253 29 100.0 34 ............................. CCTGTGAGCTGTTTAACTAGTCCTTCGTCTAAAC 82190 29 100.0 37 ............................. ATGTATTTCGTATGCAAATATTGAATAGCGGATGTCG 82124 29 100.0 37 ............................. GTTAATGCCCTTTGTTTCCATTTCTTAGATTTCGAAG 82058 29 100.0 36 ............................. TCAGCTTAGTTGTTTCTGCCCATTCCTCGTTATAGC 81993 29 100.0 37 ............................. TAACTCACTTCCTCTTCATCTACAAATAGAGCACTAT 81927 29 100.0 35 ............................. AAAGTCAAATGGATCAAGTAGTTCTAAAAGTTATA 81863 29 100.0 36 ............................. CGCGTTGGATTGGGTCGCCCTGCGATTTTTGTTCAA 81798 29 100.0 35 ............................. GATTGTTGAATCGCTTTGATTAAATCTGCATTACT 81734 29 100.0 35 ............................. AAATATACGATCCATTCGCCGGCGCTTCTGTTCGG 81670 29 100.0 35 ............................. TGGCTAATCTTGATATTAGAAGCGTTGTCATCCTC 81606 29 100.0 35 ............................. ACACCATGATTATAATTTAATGCCATTGCATATTC 81542 29 100.0 36 ............................. CTTCGATGGTAGACTTGGCTGGTAACTTGGCTTCTT 81477 29 100.0 36 ............................. ACTTCTGCTAGAACATTACGTTTTAAGAATGTCTTT 81412 29 100.0 34 ............................. TATGGATGGGAGTCGGCTCAAGATGAGGCTAAAT 81349 29 100.0 34 ............................. ATAAAAACGGCATCCCATAAAATTCTCGTACGGT 81286 29 100.0 35 ............................. TCAATTAGCGCAAATATAAGCTTCACACCTGCGTC 81222 29 100.0 36 ............................. CGCCACTTCGCTATAAGCTCGATTTAGCGGGCGCAG 81157 29 100.0 37 ............................. AGGTAATCCCTGTTGTTAATCTGTATCAGGATTACCT 81091 29 100.0 36 ............................. ATCTTCTACCTTATGTTTTTTACCGCTAGAGTCTAA 81026 29 100.0 36 ............................. GCTTCAATAAAGCGATTTCTTTATCATGATCGTTTT 80961 29 100.0 37 ............................. GTATTCTAGCGCTTTGGGTGTGGTTACTTTAGTGATA 80895 29 100.0 36 ............................. GTATTAACAGAAGTATTTGATCGTTACGAAAAAACA 80830 29 100.0 37 ............................. AGCGCTGCATTTCGCTGGGGGCTCGAAAAGGGGGAAG 80764 29 100.0 37 ............................. AGAAGAAGCGCTAGCGCTACATACGCCCATTTATTAA 80698 29 100.0 34 ............................. CGCCTAAGCCCGCAATACAAAGCTAATTTAATCA 80635 29 100.0 36 ............................. GAGTTCTCGTCAAAGTAAAATTCACCTTCGCGTGTT 80570 29 100.0 35 ............................. AGATCAGAGACTATAACAGGCAGTAATGGTTCAAC 80506 29 100.0 37 ............................. ATATGTATCTTGCGAAAAAACATGTAGATTCATTACT 80440 29 100.0 35 ............................. GTTAGACGAATAGCAACTGGATATGCTTGTTCAAA 80376 29 100.0 36 ............................. TTCCTTATTTGCTTTCAGCTGCGCGTCAGAGGTCGT 80311 29 100.0 36 ............................. AGAAAAACGTCCCCTTCTTGATCCCAGTGCTTCAGC 80246 29 100.0 35 ............................. GAGACTGATTGACACTGATTATTTGGTTTTAGACG 80182 29 96.6 36 ..C.......................... ATTGGCTACATGGAAGCAGTCAACTTCAAAACTATT 80117 29 89.7 35 ..........T.............C...A TAATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 80053 29 86.2 0 ........C....C..A...........G | T [80026] ========== ====== ====== ====== ============================= ===================================== ================== 38 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCAGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGCATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACAGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTTTTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAATAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTGTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGATGACAAAATGAGATTTAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATTGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 89279-88670 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWE010000003.1 Listeria seeligeri strain FSL L7-0835 NODE_3_length_279952_cov_45.034969, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 89278 29 100.0 36 ............................. TGTAGACGTTCAATGTGCGTGCGCCCTTACGTACTC 89213 29 100.0 36 ............................. TATCATATGCAGTAACTTCATCTAGCACATTAAACT 89148 29 100.0 35 ............................. CCTATCCATTTTTAACATTAGAACACGGATCGAAC 89084 29 100.0 37 ............................. GTATTTGCGTTGTTTGAGCTATTCGACACCGATGTCC 89018 29 100.0 35 ............................. GATGTTTATTCGTCTTCTTTTCATTCTCGTTATAT 88954 29 100.0 34 ............................. TTCAGAAACGTCTTTTTTTCTCATGCTCGACCTC 88891 29 100.0 36 ............................. TTTTTCCGAGCCATCATCACAAGCGCGGTTTTGAGT 88826 29 100.0 36 ............................. CTGTTTCCTTCTAGAAGCGAAAGGTGCGAGGCCTTC 88761 29 100.0 34 ............................. TTTGAAAATTCATGTGCGAATAAATATGTGCTTC 88698 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCAACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGATCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //