Array 1 167251-168012 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031253.1 Neisseria lactamica strain M17106 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 167251 36 100.0 30 .................................... CTGCCGTCGGTGTCGGTGTGGCCGCTGCTT 167317 36 100.0 30 .................................... CAGCATCCAACAGGCAGTTGCTATAGTGAA 167383 36 100.0 30 .................................... TAGATTTCCAATGTAGAACTTGAGTTTTGG 167449 36 100.0 30 .................................... CTCGAAGTGATGCAAAAACCGTGATTTCAG 167515 36 100.0 30 .................................... CAGACGGCATAGGCACTGTATAGGAAATAG 167581 36 100.0 30 .................................... CGGTTGCGCGCGGGACGATTTTGCCGTATG 167647 36 100.0 30 .................................... TGTACTATGCAATTCAAAATCTCTTGGCAA 167713 36 100.0 30 .................................... TTTAGTGCGTGATGTTTGGGCAGAGCAGCA 167779 36 100.0 30 .................................... TTTAGTGCGTGATGTTTGGGCAGAGCAGCA 167845 36 100.0 30 .................................... CTGCCTGCTGGAATCAAGCACGGTTATAGT 167911 36 100.0 30 .................................... CAACTTCTTCCGAACCCAATCTAAACATCG 167977 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGCTGCGGCAAAATAGAAAACCGCCCTTAATAAGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATCAAGGCTAGAATAACCCCAGCATCAATCGTAACAGTCAATTGCAAATTGCCTACCTTAATAGAGATTTGCATTTGGATGTTTCCTGTAAGTTTCAAAACTTGGCAGGAATGCAAAAATCCCCTTGTTCTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGATTTTTTAAAATCCGCGCCTCTCGCGCCCTGAACCTATCTCATAAAGTTCCTTATATATTA # Right flank : TACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 394804-396755 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031253.1 Neisseria lactamica strain M17106 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 394804 32 100.0 34 ................................ CGGCAATGTCGGAACAAACATATCTACGGTAAGG 394870 32 100.0 33 ................................ CTGATTTTATTCGTACTCGTATGGGCATTTAAA 394935 32 100.0 33 ................................ AGGTCTGTCAAAGAACTCTGTTATGACGTTTAC 395000 32 100.0 34 ................................ CTCAATCGGCTGAAGCGGATGGGGAAAGCCCCCA 395066 32 100.0 35 ................................ GGCCTCATGTTACTGTTATCGAAAAAACCGTTATC 395133 32 100.0 33 ................................ GTCAACAATCAGCACCGCGCCTTCCGGTATGAC 395198 32 100.0 34 ................................ TTTGAATGTTTCGTAGATGTCATAGGCCAAAAGC 395264 32 100.0 35 ................................ TTAACTTTAGGCGTTTGATTGGGTTTGGGTTTTTG 395331 32 100.0 34 ................................ TTCCCCCATTCGACCGCCAAAGCCTTTTTACTGA 395397 32 100.0 34 ................................ CCGTTAAGCGCATCAATCTGCCGCGCAATCTCCC 395463 32 100.0 35 ................................ CTCTCTCTCTTCGTCGCTTATGGCGTATTCGAGAG 395530 32 100.0 34 ................................ AGAAAAGTGCCGATTGCTTGAGAGGGGCGTGCGC 395596 32 100.0 33 ................................ AAGGATGTTGTCCTGAAGCGAACTGATAAAGCC 395661 32 100.0 34 ................................ TCACCGTTCGGCTTAAAGCCCAACGCCGCATAAC 395727 32 100.0 33 ................................ AAAATTCCGCCTCATCCTCCGACGGAATACCCG 395792 32 100.0 34 ................................ CCGTCAAAGCCCAAAGACGGCAGCGTCTGTCCGC 395858 32 100.0 35 ................................ AACACACGCGGCTGATAACAGCCGGATAACAGGGC 395925 32 100.0 34 ................................ CGCCACAATCCCCCGCGCCGCATTAAGCTGCGCC 395991 32 100.0 35 ................................ ATTTTTTGCTCCTATCCGCCCGTAGGCGGTCAGTT 396058 32 100.0 34 ................................ CTCATCGCCGGATAAGACACACCGACTTGTCTAG 396124 32 100.0 34 ................................ ATCGCCATGGCTTATCTCTATTCCGCAATCTTGG 396190 32 100.0 34 ................................ CTTCAAACGGTTTTCCTCGCTCCTGCCAATTATC 396256 32 100.0 34 ................................ CGCAAATCCGTAAGACAGGCTCGTATGGTGCGGG 396322 32 100.0 33 ................................ ACAGGGCGTGATTAAGTTCACGAGCGGTCGAAA 396387 32 100.0 34 ................................ AGACGCACGCCCGAAGCATCAACGGCTTGGAGGC 396453 32 100.0 35 ................................ AAAAACGCTTCATACGCGGCGAACAGATTTTGCAA 396520 32 100.0 37 ................................ GTCGTGAGCGAAGATGCGGCGGGCAATCTTTTGGTGC 396589 32 100.0 36 ................................ TGACCATGTTTCCGATAGTAGTTGAAATTGTCGGTA 396657 32 100.0 35 ................................ CGCCGTAAATATTGGGTCGGCAGCTTGAGGGTAGC 396724 32 93.8 0 ......................A.A....... | ========== ====== ====== ====== ================================ ===================================== ================== 30 32 99.8 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGAGGCAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGTGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : CGGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTTAATCGGGAATATCTTTGTTAAAAAACGGCTTGATGTTATCTGCACATATTAATATAATGATAATTATTATTAATCAAATATGGAAAATAGTAGGGATGTGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGTTGGCAGCCTGCGGCGGTAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCCCCTGCCGAGCCTTCGGTAGAAACCACACCGGTCAACCGGCCCGCCGTCGGCGCGGCAATGCGGCTGTCGAGACGGAATATCGCAACTTTTGATAAAAATGGTAATGAAATTCCCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //