Array 1 851359-853506 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082202.1 Streptococcus suis strain SS389 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 851359 36 100.0 30 .................................... AGCCAGTTGATTAGAATGGCACGGGTAAGC 851425 36 100.0 30 .................................... CAAGTTTGATGAAGAGACTGAACTTTGGCC 851491 36 100.0 30 .................................... TTGTTGACGGTATTCTTAAATTCTCCTTAA 851557 36 100.0 30 .................................... TGACTTGCCGTCAAAGTCTTCTGCTTGCGT 851623 36 100.0 30 .................................... AGAACAGAGTTAGACAGTCACTTGCAAGCT 851689 36 100.0 30 .................................... CTAATAGCTTCGGCTGTCGAATATTTATCT 851755 36 100.0 30 .................................... TCATATCCTGTTTGTTCCCCCCAACGTAGA 851821 36 100.0 30 .................................... TGACAATGAATTGTACAAGTTAGAAAGGCG 851887 36 100.0 30 .................................... TGGATTGATGGAAGCTATCAAACAACTTTA 851953 36 100.0 30 .................................... GGCAGGTCATCGTTTAAATCCTCAATCCAT 852019 36 100.0 30 .................................... GTTTAGATATTGACCTGTGCCAGCAGAAGC 852085 36 100.0 30 .................................... ATGAAACAACAATCGGTACTAACTGTATTG 852151 36 100.0 30 .................................... AATGTAGTTGTATTTAAAAAACATTGTATC 852217 36 100.0 30 .................................... CTTAGAAAATGCGGTCACTTGGAATTTATG 852283 36 100.0 30 .................................... GCTTGATGTTTCTGAAAAGTTAGATGAGCT 852349 36 100.0 30 .................................... AGGCTGGTGCTTGGATTCGCTTCAATCCGT 852415 36 100.0 30 .................................... TAAAAATTCTAGGCGGTATCATCGAGTTTC 852481 36 100.0 30 .................................... ATCACGACGTATGATAGAGCACTTGTTGTA 852547 36 100.0 30 .................................... CAGCGTAATGTTTTCCCAGAGTATGTCTAT 852613 36 100.0 30 .................................... AGTCGTGAAAAGGGCAACGGGTACATAAAC 852679 36 100.0 30 .................................... CGGTTTGAACAATGGGCGAAACCTTGCAAC 852745 36 100.0 30 .................................... TTCGACAACGAGGAGCAGTGGTAAGCCCCC 852811 36 100.0 30 .................................... AACAGCTATTGACAATATGCGTTCTAAGTA 852877 36 100.0 30 .................................... TTATAACGGTTGAACCGATACGGTTGACAA 852943 36 100.0 30 .................................... GTTCTTCAAAGAATTGTCTTTGTTGTTCGC 853009 36 100.0 30 .................................... TTAAATATATCTGGGTCTATACCTGCAAGC 853075 36 100.0 30 .................................... AATGGCGAACTAAAGAAGAGAAGTTAGCCT 853141 36 100.0 30 .................................... CCAACATAATGCTACTGACGGAGATGTGCT 853207 36 100.0 30 .................................... TACTCAAAAGGCATAGTCATTCTGCTATCA 853273 36 100.0 30 .................................... TTTGAGGGGTTCAATTCCTCTCTACCCTAT 853339 36 100.0 30 .................................... ATTTATGAGACACATAAACCCCATCTTCTT 853405 36 100.0 30 .................................... TAAGGGTGCTGATGGTGCAAATGGTACACC 853471 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTTTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTCGAGATTTTACAAGTTTATCGATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACAGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTCCTAGAAACGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CATGTTGATTTGTACGAAATCATAACTATGATGTTAGTATAATATTGTAGACACGATTTTCCGAATACTATAAAATATAGAAAAGGAAGGAAGTGTCTAGAATGTCAAAAAGATATACAAAAGAATATAAAAACACCATTGTAGAGCTTTACAATTCCGGTAAAACACTTGCTGAGCTTAATAGTGAATATGGCCTACCTAAATCCACAATATTAACATGGGTAAAGAAAGCTGAACCCATTGCAGTAGATAATAATAAAACAATTACACAAGCTGATTATCAAGCCATGCTTAAGAAGATGGCTAGAATTGAAGAAGAGAACGAAATATTAAAAAAAGCCATGGCCATATTTGCAAAGAAGTAAGCTCAATATATAAGTTTATTACTGACAATAAACATATCCATGATATAAAACTAATGTGCAAAGTTTTAAAGGTTTCTAGAAGCTCATATTATAAAAATCTCAATAAAAAAGAAAGTAAAAGGAGCATTGAAAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 854789-855814 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082202.1 Streptococcus suis strain SS389 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 854789 36 100.0 30 .................................... TCGCCTCTGCAAATGCACCAATGACCATGC 854855 36 100.0 30 .................................... ACGTGATGGGTTTACAATCTCTTCACGTTC 854921 36 100.0 30 .................................... TAAGGGGATTTCTGATGTCATCAAGACAAC 854987 36 100.0 30 .................................... TCGTTGATAATCTCGCCTAGTTCTCGGCCC 855053 36 100.0 30 .................................... GCAACACGAGGGGTTGGTTACGATAGTACC 855119 36 100.0 30 .................................... GGATTATCACAGGGAAAATGCTTCCGACAG 855185 36 100.0 30 .................................... GAATACTTTGATGACAACAGCTTTTATAAA 855251 36 100.0 30 .................................... TAAGACTTGTCCTTGACAGTAGGCACAATC 855317 36 100.0 30 .................................... ATAAGCTGACAGGAAAAAGTGAAAATGATG 855383 36 100.0 30 .................................... TTGACAAGATTTTCACTTACCCAGATAGAA 855449 36 100.0 30 .................................... TAAAGTGCAGGCTTATCTACTGCAATTGCA 855515 36 97.2 30 ...............C.................... AAGCAAAATATTTACGTTCTAAGCTATACA 855581 36 100.0 30 .................................... ATTACCCTAAAGCTAATTATCATGATGATT 855647 36 100.0 30 .................................... TTGTAACCTTCTTTCTATTAGTTGTTGATA 855713 36 100.0 30 .................................... ATCCAATCCAAGATATTATTAAAGGAATTA 855779 35 88.9 0 .........................A.-.A.....G | T [855812] ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.1 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : TAAAGATGGTTGGTGCTATCTAGCTTCTGTTATGGATCTTAATAGTAGGAAGATAGTTGGACACTCTATGTCTAAAAATATAGATACTACATTGGCTATAAAGGCCTTAGATAATGCCTATAAACTTCAAAAACCTGCTAAAGGTCTAATTATTCATAGTGATTTAGGAAGTCAATATACAAGCTATGAATTTGGGGAATATGCTAAAGAACACAAGCTAATTCACTCATTTAGCGGTAAGGGAAACCCCTATGATAATGCTTGTATAGAATCCTTTCACTCAGTATTGAAGAAAGAGGAAGTTAACCTGGTTAAGTATTTTGATTTTGATGTTGCCAGACTTGCAATATTTGAATATATTGAGTCATGGTATAATAGAGAAAGAATACATAGCTCTCTAGGCTATATTACTCCCCAAGAGTGGGAAGATAAGTTTAAGAGGGTTGCATAAAATTTATTCGAGAAAATGTGTCTACTATATTGACATAGGTCCACTATCC # Right flank : GCAGTAAGTTTATAAAGGAAGGAGGGGAGTATTTGGATGTCAAAACTGTTATTTTTTAATACTCCTATTTCTAACAGTAGCAGTGAATATTGTAACTTTAATTATCAAAAAAATTACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGACAAAGAGCTTAATTTAATAGGTCTTCCCGATTAAAACTTGCATTTATATCATTGTTTTGATTTTTTATAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCACCCTTGTCCCATCTCCCCCTCCATGCTATACTATATATAATCGTTTTATTTCAAAGGAGACAAGGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCGGAAGAGGGCTTGCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //