Array 1 1-317 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQA01000068.1 Rhodobacter capsulatus B6 seq0068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================== ================== 1 33 100.0 38 ................................. TCGTCGACCCAGAGGTCGAGCAGATGGCGTTCAAGCCC 72 33 100.0 37 ................................. TCCGCCGCGAGGCAGAATAATTCCATATTGTTCGCCC 142 33 100.0 40 ................................. CCTGTGACGGTCTTTCCAGTTTTCGTCCTTCGCCAAGCCC 215 33 97.0 37 ..................G.............. TGCGGGGCCTCCCGCTGGCGGGCCTCGATTTCGGCCC 285 33 78.8 0 ..................G.......ACCTCC. | ========== ====== ====== ====== ================================= ======================================== ================== 5 33 95.2 38 AGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : | # Right flank : CTTGGGCGGCTTGCTGCGCCGAGGCTGCCGCCCTAACCCAAACTTTTCGCCAGCGCCTCGGCCTGTTTCAACACCGTCCGCACCGCGTCCGCGGCGAGGTCGGGGGGGTAGCCGAAGCGAGCGAGGATCTTTTTCACCTCGACCCGCATCCGGGCACGCACGTTTTCGCGTCGCCACCAGTCGGGCCCGGCGTTCGAGCGCACGATCCGCACCAGTTCCGCCGCGATCACCTGCAGTTTCTCGTTCGACATCACCTCGACCGCGCTCTTGTTCTGCGCCAGCGCGTCGTAAAAGGCCCGCTCGTCCACGGTCAGCCCATCCTCGGGCTCGTTGCGCAGATCCTTGGCGATCTCGATCAGTTCCTGGATCACCTGCACCGCATCGACGCTTCGGTTGTGATAGCGGGCAATGGCCTGTTCAAGCCGTTTCGAGAATTCCTCCTCCTTGACCACGTTCGCGCGCGTCCGGGCCGAAATCTCGCCGTTCAACAGCTTCTTCAG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 240-738 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQA01000076.1 Rhodobacter capsulatus B6 seq0076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 240 36 100.0 30 .................................... GCATTTCGCCATCAGCGCCAGCTGCGCGCC 306 36 100.0 31 .................................... GCGGCTGGCCTGAGCACCAGCCGCGCGGCAA 373 36 100.0 30 .................................... GGTGATGGACGAGAGCACTGGCGCACTTGG 439 36 100.0 30 .................................... CTTTCGAGCGAACCACGCCGCGCCGAGCGC 505 36 100.0 30 .................................... CCCGGCTCAAGAGTCGAGAGGGTGTTTCTT 571 36 100.0 30 .................................... TCGTGCAGCTCGTCGATGATTGTCAGCACC 637 36 100.0 30 .................................... ACGCCGCGCGACACTGACGAGGCGCGGATG 703 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 100.0 30 GTTGCGGCTGGACCTCGATCTCTGAACTGCTAGTCT # Left flank : CAGGGTCTGCGGCGCGCAGCCGATCTTCGCGGCAATCGACATCACAGCCTGCCAGCGCGATCCATGCTGCCCCTCATTGTCGAGGACCAGACGCACCGCGCGTTCGCGCACTTCAGGGGAAAACTTGTTCGTGGTCTTGCTCATGATGCTCCATCCTACTCAGGAGTTGGAGCCTCCGGCAAACCCGGAGCGGTTCAAACTGCTAGTCTGTCGATGTCGATCTGGTAGTCATACCGCGCG # Right flank : CGATCACCTCCCAAGCCCCTGAACAATAAGGGGATTGGGGGGCTGATCATCGAGAAAATCTGAGCGAATCCCATCAAAAGAGTGCCAGTTGTTCCGGATTTTTGCGCGATGCGCGGCGTCCTTGGTCGGAGAAATGGACGATATCACGATACTGCCGATCGGTGAAGTTCAAGATCTGGATGTCGCCTTTGTCGGGCAGGTTTCTACCGATTCGTTCGACCTTAGCCTGGAACGCCTCCTTACCGTTCACAAAGCGCGCATAGACAGAGAACTGGCTGCGTTCGAACCCTTCATCGAGCAGTGACCTGCCCCCCGGTCGTCCCTCGTTCATAACGAGAGTCCTTGGGGTTGATAGTGGTCGGTTTCGGATGGGGCAAGCGCGCCGGGCGCGGAGCCCTCAGATTGCTCAATCGCTCGGCGCGCTTCTGCCGGGGTTTGATTGCCCAGCGAGGAATGCGGCCTGACGTTGTTGTAGTCGTATCGCCATAGGGCCAGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCTCGATCTCTGAACTGCTAGTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCTCGAATTCTGAACAGCTAAACT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 43237-38373 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQA01000010.1 Rhodobacter capsulatus B6 seq0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 43236 32 100.0 34 ................................ CAGCCGCCGCCGCAAAGTTCTTCATCGTCCCTTT 43170 32 100.0 36 ................................ TTTCCGCGCATGGTAGCCCTTTGGATAGGACCGCCG 43102 32 100.0 34 ................................ ATCACGTCACAGCCAGCTTTAAAACCGCGAACAA 43036 32 100.0 34 ................................ AGCACGTCGCCGATGCGCTGACCGGTGCCAAGGC 42970 32 100.0 35 ................................ GCCCAGAGACGCCGCATCGCGTCGTCATCGATCTT 42903 32 100.0 35 ................................ ATGTAGATCCCGGCGGCACACAGAACCGCGCCAGC 42836 32 100.0 33 ................................ CAATACCACACCCCGGGCCTCGACAGCCCGGCG 42771 32 100.0 36 ................................ CCATAGCCATCGTTGGTGTTGGGTGCAGCCAGAAAT 42703 32 100.0 36 ................................ CTGAACAACCTGACCCTTGGCGCGCAGGCGAACGAA 42635 32 100.0 36 ................................ TCGCAAAGCACCAACCCCGCCGCGCGGAACGAAAGC 42567 32 100.0 35 ................................ TTGGTTGGCGATGGTCGCCAACATGCAACAGATTC 42500 32 100.0 36 ................................ ACCCCGACGATTGCCGGTGTGATCAACCTGACGGGC 42432 32 100.0 35 ................................ GTCGTCAAATCTATGATCTCGATCAGCGCGCAAAC 42365 32 100.0 35 ................................ AGCCCGAACAAGCGTGGGGCCTGACGGTGCGCGAG 42298 32 100.0 34 ................................ CTCAAGCTCACGCAGCCCAGATCGGACGGCTCGC 42232 32 100.0 35 ................................ ACTCATAACATGCTCTCGCTGCGGCGGGAGCGGGA 42165 32 100.0 34 ................................ TTGCGATCGACGCAAGAGCACTATCACGTGCCAT 42099 32 100.0 36 ................................ AAGATCCTGAACAGGATAGGCACCGGGTCACCGGCT 42031 32 100.0 38 ................................ CAGACAAACAGATTGGCCGGGGGCATCCAGGTGACAGC 41961 32 100.0 37 ................................ AAGGACCAATTTACGAAACTGCGGCGTGAGATCGACG 41892 32 100.0 35 ................................ CCCTGTCCATCATTGGTGTTGGGCGCGGCCAGAAA 41825 32 100.0 35 ................................ GCGGGCGGATATCTGGGGTGGGTCGAGCCGATGAT 41758 32 100.0 35 ................................ AACGCCCGTCACTGGCGCGGCGCCCAACAAGCTTG 41691 32 100.0 34 ................................ CCGCCCGCGGCGTTTGACCTGGTCGCGGGCAGCT 41625 32 100.0 36 ................................ AAGCCGTGCTGGCGTCCAACAACACCATCTATGCGA 41557 32 100.0 34 ................................ CGGGTTGATTTTACCGCCTCGGTCTCTGGCTCGG 41491 32 100.0 35 ................................ AGGATCGGCCGCCTGATCGCTGACGCCGCCAAGGC 41424 32 100.0 34 ................................ TGAGCGATCTGGCGTTGGCCAAGATTGCCGCCAT 41358 32 100.0 35 ................................ CTCTGGCGCGTGGGTGCCCACAGCGACGCTGGGCA 41291 32 100.0 34 ................................ CGCTTGCCATTGCGGCACGGCTTGCCGAACAAGA 41225 32 100.0 35 ................................ GTCCTTCAGCATCGCAATTTCCAGTTCCAGCTTTT 41158 32 100.0 34 ................................ CAATGGCATGGCCCCTTTTCCGATGGTGTCGGAT 41092 32 100.0 37 ................................ CGACGCCTGACGCCTATGACGCCCACCTTGCCGCCAA 41023 32 100.0 35 ................................ TGGTCCGAAGAACAGGTGACCGTTGCCGTTCGAGA 40956 32 100.0 34 ................................ TGCTCATAGATCGCAGCCTCGACTTGCGTGATGA 40890 32 100.0 36 ................................ ACCTATTACACGACCACGTTTGCCGTGATCGCGGAA 40822 32 100.0 36 ................................ ATGGCCATCACCGGCACAGGTCGCGGCTTTGACACT 40754 32 100.0 37 ................................ AATGTCGATATAGCCGATGGTCACATTTTTGGCGACC 40685 32 100.0 34 ................................ CGTCCAGATCGGAGTTGATTACCTCGACGCGCTG 40619 32 100.0 36 ................................ TCGGGCTGGTCGAGTTTTACGGTGACGACAAGGCTC 40551 32 100.0 34 ................................ AACCGATCGGCAAAGCTCTCCCGAACGGCCGGCG 40485 32 100.0 35 ................................ GCCTGCTCGACCGTGAGGCCGGGCAGGCATGGCTC 40418 32 100.0 34 ................................ CGCCGCCGCCTCGGCCGCCGCCGCAGCGCTCTTC 40352 32 100.0 34 ................................ GGGCGGGTTTGAAACGCCAGCCGCAAATGCAGAG 40286 32 100.0 36 ................................ CCCGGTCTGGTTGCCGATCAGCACTTTAGACGGGCA 40218 32 100.0 35 ................................ GGACCGAAGGCAAAGGTCCGATCGTCCTCCGGCCC 40151 32 100.0 35 ................................ GTCGGCCGCAGCTCGGGCAGGCCGCGCAGGTAAAA 40084 32 100.0 35 ................................ TCCGCGATGCCGATGATGGGGCCGGTGTCGTGACG 40017 32 100.0 34 ................................ TGACCAATGCGGTCGTCACGCCTGCCGCGGCGCT 39951 32 100.0 35 ................................ CTGCCGCTCCGTGCCAATCTGCCTGCGTAAAAAAC 39884 32 100.0 35 ................................ GACGATTACCTGACTGCAACATCGGCTGAGCGCCT 39817 32 100.0 35 ................................ TGCGCCTCGGCCCCGGTTATGCGCTGACCCTGCGG 39750 32 100.0 42 ................................ TGGCGCGGACGTGGTGCGATCGATTGGGGCGCAATGGTCCAG 39676 32 100.0 35 ................................ GACAAAAGGTCGGACCGGCAGGCAAGGCGCAAGCG 39609 32 100.0 34 ................................ TGGCCGATCTGGCCGCCAAGCGCGGGCTGGTCGC 39543 32 100.0 37 ................................ GGTGGATGGACCGCGAGGATTGGCGGCAGGGGGTGCT 39474 32 100.0 35 ................................ TCCGCTTGCCTTCGCAGGTATTTTTCATACCGCTC 39407 32 100.0 36 ................................ CCCGATGTTGAGCCGCTTGGCCGTGAGCATGAGCCC 39339 32 96.9 36 ..............A................. AGCAGCGCCAACCCGTCGTTGCGCCAATCGTCGCAG 39271 32 100.0 35 ................................ GGCCGCGCCCGGTTGGTGTAGCCGCCCGCCGCGGT 39204 32 100.0 35 ................................ CGCGCGACGTAATCCACGGCCCGGGCCACGGTGAC 39137 32 100.0 35 ................................ CCGCCCCGGGCCGCCGCTGCGACGGATTTTCGCCG 39070 32 100.0 35 ................................ CCGCCCCGGGCCGCCGCTGCGACGGATTTTCGCCG 39003 32 100.0 36 ................................ ACGACCGCACCCGCACCGGGGCCGAGAAATATGCTG 38935 32 100.0 34 ................................ TTGGGTCAGTGCTGCTCAACGTCGGCGTGGCCAA 38869 32 100.0 35 ................................ GGTCCGAACATGCGCGACGCGGCGGGCAACAGCTA 38802 32 100.0 35 ................................ GCCCCGGCGCTCGAGGGAGGATGATCAGCGCCGGG 38735 32 100.0 34 ................................ CGGCCAAGGCAAACGGCATCCGGCGCCTGCACTT 38669 32 100.0 35 ................................ TTGGCGAAGGGGCCATCGAGCTTGCGGGGCGGCGC 38602 32 100.0 35 ................................ TTGGGCATGCTCGGGTTTTCGTCTGGCGGATACAC 38535 32 100.0 34 ................................ ACGACGAACGGCCGATCCTGCTCGATCACATAGC 38469 32 100.0 33 ................................ GTCCTGCCCGCCGGTCTGATCGGACGCACTGCA 38404 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================== ================== 73 32 100.0 35 GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Left flank : TCGACGCCTATCCGCCCTGGTTCTGGAGTTGAGATGCTGGTTCTGGTCACCTACGATGTGAACACGCTCGAAGAGGGCGGCAAGAAGCGGCTGCGCCGGGTGGCGAAAGCCTGCGAGGATTTCGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAGGTGGACCCGGGGCAATGGGTGAAGCTGAAAGCGCGGCTGGAAGCGGTCATCCGGCCGGAGTTTGACAGTCTGAGGTTTTATTATCTGGGGTCGAACTGGGAGCGGAAAGTTGAACATGTCGGCGCCAAGCCTGCGCTTGACCTGAACGGCCCGTTGATCCTCTGATCTGCGAACCCCAAGGGTGTGGCCGTTTCCCACCCGGTTCGCACCGCGTCAGCTCTTTGAAATCGTGGATGAAGCACCGGAGCACCTTGCGCTGCCGTTCCGGAGGCGCTTGCGACAAGCACCTTCGCGCCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCC # Right flank : CGTGATGCGTGCCCGATCCATCGGGTTTCGCGGCCGATGCGGCTCCCGAAGTGATCAGGGCTGGTGCGCGCAAATCCATCGAGCCAATCGGGCGCCCAACGATCCGCCGCGACATGTCCGAAAATCGGACGCTCTGATTGCGAAAACTCGGCTATCCTGTTGCGGTCTTCCAGTTGCCTGCACACTGTGCCGGCCTATGGAACGGGAGGTCCATGGACCGGGAGACCGCTATCGACAGCAGATCGGCCATTCGTTCGGGGGAGGAGCAGATGGCACACCGTATCAGAAAGCGCGGCTGGGAGGAGTTCATGGCGGTTGGCCGCGCGTCTCCGGATGTCCGCAGCGAAGTTTTGCAGAGTTGGCAGCGGTCCGCGGGGCGACGGATCGAAAAGCTGAAACAAGCGCCGCTCCTGAGCGAGGAGGACTTGCTGACGCAGAGGGCGCAGGCGCGCCGCCTGCGGTCCGGCGCGCGCGGGGTTCTGAACAGGGCAGGAAGTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 261-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQA01000089.1 Rhodobacter capsulatus B6 seq0089, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 260 37 100.0 41 ..................................... AGCGGCGGTAGCAGTGATCAGCGCCTCACGCGCCATGATCA 182 37 100.0 34 ..................................... TCGTCGACCCAGAGGTCGAGCAGATGGCGTTCAA 111 37 100.0 33 ..................................... TCCGCCGCGAGGCAGAATAATTCCATATTGTTC 41 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 100.0 36 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : TCCTGGGGCAGATCACCCCCGCCACCCCTCGCACTGCCTGGCTTTGGGGTCTGGCAGAGCTGATGTTCTGGGCGGCGATCGCCTATGGCATCGGGCTTTTCGTGCAGGGGCTGATCCGGCGCAAGGGGATCGACAGCCCCGACAGCATCGGCCCGCTCTTGCGCCGCGCCGTCAGCTGGACGGGCTTTTGCGCCCTGGTCTGCGCACTTCTGGCGGTGGCGCTGAAAGGCTGAGCGCCCCTGCGACGCCCTGTCCTGCGCGCGGGAATTTCGCGGCTGGACAGGGTCGTTTTCGCCTGCCAAGCTCTGAATGTGGCGGTGAAAACGGGTCAAATCGGCGATTCACCGTTGGAAATGCAGCCATGGCCTTGAAGACAAAGGAAAAAGGAGCAAAAAGACAGCAAAACCGGGGCCTTCGGCGGCCTTTCGAGGGACAGGAGCACGGCAAGGTTGGAAAGCGGACCGAAAAGCGCTTTCGGGTCATGGGTTTGCAGAGGGTGA # Right flank : CCCTG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 8981-9382 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQA01000089.1 Rhodobacter capsulatus B6 seq0089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8981 37 100.0 40 ..................................... ACCAAAGGGTGGGGAGCCAAAACAGGAGGGCGGGAGCCGC 9058 37 100.0 38 ..................................... AACGTGAGCTGGACGCGCGACTGCGCGAGCGCAGCCTT 9133 37 100.0 37 ..................................... TCAGAAAGGCTTTCGGTGGCCAACAGCATCTCCTTGA 9207 37 100.0 32 ..................................... ATGCACTCCCCGTTAAGCATGTAGTATTCCAC 9276 37 97.3 34 .......................G............. GGCGTGGTGTTTTTGGTGATGTCGATCATTTCGT 9347 36 73.0 0 ......................-.G.G..GCG.TCTG | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 95.0 36 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : CCCCCTTCGTGCAGGCCTTTGGCGCGGCGATGCGCAAGACCGACCCGCAATGGCCCGACATCGCCCCGGTGCAGGAGCTGCTGGGCGCCGCCGATCCCAAGGGCAAGGGCCACGATCAGCGCGGCTACATGGGCCTTGGCCGCGAGGCGCCCAGCTATCCGGAATTGCGAAAGACCGCCTATGACAAGGGCAAGGGCCATTCCGGTCCGGACTGTATGCTTTCGCCGCCACGGCGCAGTGCGAAAACCGGTCGTAAGGAGGGGTGAAACCCGCGCTTTACAGCCCGGCCCCGGGCTGTCCCTCTTCTCCGGGAGGGGCTTCTACGCCCGAAAATTGTGATTCGATGTTGGAAAGCAGATCATGTCTCTGAACCAAAAGGAAAAAGGAGGAAAAAGACGCGCAAAAACCGGGCTTGCAAGGGCTGTTTCAGCGTGTCGGGCACATCACGGTTGGAAAGCGGACCAGAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTAT # Right flank : GTAATGCGTCTGGGGATCGGTCAGACCAGCCAGTAATTCCCCGGCGGTTCGATGGGGGCGGCGTCGCCGTAGGTGCGGGTGCGGGTTTCGCCGCTGGCGCCGATCGCATAGACGCGCAGGCTGTCGCCGGGGGCAAGTTCGGCCGCGACGCGTTGGGCCAGCGCCGCCGCGCGCTGCTCGCTCAGCCGCGCCTCGAAAACCGAATATTGCACCCGCGTCGCGGCCCCCTCCAGTATCCGCGCCACCCGGCGCCGCTTGCGGTCTTGCGACACGTCATAGGTAAAGACCATCAGCATCTCGGCGCGCGGCATGGCAGACCCTTTTCGGTGCGGATTTCGGGCCCCAGTCTGCCGCGAAACGGCGGGGGGCGAAAGTCCTTGCCGGGCGGGCGGCCCTGCGGCGGTCTGTCGTGGCGCGGGGCAATCTTGACGGTGGACAGGACGGATTTCGCCTGCCAAGCTGACCTTGAGATAGGGGAAATCGGGCAAAAGTGCCGATTC # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 10040-10373 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQA01000089.1 Rhodobacter capsulatus B6 seq0089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 10040 37 100.0 36 ..................................... CCGCCAAGTACCGGGCGGCACCATAGAGACCGGCAA 10113 37 100.0 44 ..................................... CGCCACCGACTTGCCGGTGGCCAGATCGGTGATGGTCACCGTCT 10194 37 100.0 35 ..................................... GACTTCCCAAAAACCAACGAGATACCCGTCTCGGT 10266 37 100.0 34 ..................................... ATCGACCCACTCACCCGTCAGGGCGAGAAGGTCG 10337 37 97.3 0 ...................................G. | ========== ====== ====== ====== ===================================== ============================================ ================== 5 37 99.5 38 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : CAGCGCCGCCGCGCGCTGCTCGCTCAGCCGCGCCTCGAAAACCGAATATTGCACCCGCGTCGCGGCCCCCTCCAGTATCCGCGCCACCCGGCGCCGCTTGCGGTCTTGCGACACGTCATAGGTAAAGACCATCAGCATCTCGGCGCGCGGCATGGCAGACCCTTTTCGGTGCGGATTTCGGGCCCCAGTCTGCCGCGAAACGGCGGGGGGCGAAAGTCCTTGCCGGGCGGGCGGCCCTGCGGCGGTCTGTCGTGGCGCGGGGCAATCTTGACGGTGGACAGGACGGATTTCGCCTGCCAAGCTGACCTTGAGATAGGGGAAATCGGGCAAAAGTGCCGATTCACCGTTGGAAAACATGTCATGACCTTGGAAATCAAGGATAAAGGAGGGAAAACACGCGCAAAAACCGGGCTTGCAAGGGCTGTTTCAGCGTGTCGGGCACATCATGGTTGGAAAGCGGACCAAAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTAA # Right flank : CATGCCCTACTCAACCAAGGCAGCACCATGGGACGGCAATCCTTGGCGGGCTCAATAGTCCTGCATCTGCGGCAGGTAGGGGACCGTTTCCGGGCTGCGGCAGTGGCGGGCGAGCGCGCGGGCCTCTTCGAGCATGATCCGGCGCAGGGCGTGGCGCTGTCCGGTCTGGCTCGAGCGGATCACCCGTTCGAGGGCCTCCTCGTAGCCGGTGATCAGCGCGCGGCGACCGGGGGTAAGGATGCGCAGGCTGTCGCCCTGCGGCTCGAACATTTCCTCGCGCAGGCGGCGGCGGTTGAAGAGGCTCACCGCCAGCCCCTCGGAGAGGGTGGCGCGGAACACCTCCATCAGGTCATAGACAGCGGCGTCGCCCCGGTCCTGCGCCTGATGCAGCACACCAAAGCCGGGGTGCAGCCCCGCGCCGATCAGCGCGGTGCGGATGTCGCGGGCCAAAAGCGCGGTCAGGTAATTGATCGCGGCGTTGAGGGGCGTTTTCGCCGGGC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 12543-12788 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQA01000089.1 Rhodobacter capsulatus B6 seq0089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 12543 38 94.7 29 ....G................................C AATGCGCAGGCCGCCGACCACTGGCTCGA 12610 38 100.0 31 ...................................... CTCCACGTGGGCGCAGGCGCCGGGGTGTTCG 12679 38 100.0 34 ...................................... GAATCAGATTCAGCGTATCCACGTGGCTTACCGC 12751 38 81.6 0 .............................GC.TGCTT. | ========== ====== ====== ====== ====================================== ================================== ================== 4 38 94.1 32 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGACT # Left flank : GGTAGCCGTAGCTGTCGGGGGAAAAGAGCGGCTCGAGCCGGGGCGTCAGCGCGGCGGCGACGGCGGTTTGCACGATCCGGTCGGAAACGGCGGGGATGGCAAGGCGACGGGTGCCGCCGTCGGGCTTGGGGATCTCATGCAGCCGCAGCGGCCGGGGTGCGTAATTTCCGTTGCGCAACAGCCCTGACAGCCGCGCGATCGCCGCCGCTCCCTTGGCGCCGAAGGCTGCGATGCTTTGCCCGTCGCCCCCCGCACATCCGTTGTTGCGCCGCACCTTTTCGAATGCCAAGGTGAGGGCATGGGGGTCGGAAATCTGGCCAAACAGGCCCGAAAATCGGCCTTCGTCGTTGGAAATCATGCCAGACCCCTGCGGGATAAGGGAAAAGCGAGGTGAGAGCCACAGGAAACCAGAAATTCGGGCCCGAGTCGAGGGATGCGGCAGGTCACGGTTGGAAAGCGGACCGAAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTAA # Right flank : TGGATTCATCCGAGGGGCGTCAGCCGCACCCTTCCCGCGCCGATAGTGGTGTCGGCGCCGATGTGCAGCGCCTCGGCCAACGCGAGCAGGCGGCGCAGCTCGGGCGGCGGCGCGGAAAAGGCGATGCGGCCGGAAAAGCCCGGACGGGGTTTCGTGCCCCGCGCCAGCGCCCGGCGCTCGCCCGCAATGGCCGGGGGGGCGGTGCGCAGGGCCTCGGCCAATTCCGCCTCGGACAGCGCAAGCGCAAAGCCGTGCCACTGCGCGATCCCCTTGGCGCGTTTGGCAAATCCTGTCAGCAGCGAGGCGGGATCGAGGCCCAGCCCGGCGTGATCGGCGCGCAGGCGCTGGATGATCGGGGTTTGCGTGCGCAGCGCCAGCGCCCCCGCAGGCGGCGGGGAAGCCGTCAGTTGCGCATGGGACACGGCGGTGACCGGCATCGGCACCCGCCCCGCGCGGCCCAGATCGAGGCCGCCGCGCAGCCCGGCAATCAGCGCGGCGCG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //