Array 1 216073-214744 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOXC01000003.1 Listeria monocytogenes strain 18ZQLM01 NODE_3_length_266111_cov_61.737202, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 216072 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 216006 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 215941 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 215877 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 215811 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [215802] 215743 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 215678 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 215613 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 215547 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 215483 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 215418 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 215353 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 215288 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 215225 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 215162 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 215096 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 215033 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 214968 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 214902 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 214837 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 214773 29 93.1 0 .......................C....C | A [214748] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 8366-5289 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOXC01000007.1 Listeria monocytogenes strain 18ZQLM01 NODE_7_length_200895_cov_73.376489, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8365 36 100.0 30 .................................... AGAATACTTTTTAGTTCATTCTAAAACGCC 8299 36 100.0 30 .................................... TGAAGAGAGCAAAGAACGTGTGAAAACGTG 8233 36 100.0 30 .................................... AAGCGAAAGCATTATTTGTAGAGGTCCATG 8167 36 100.0 30 .................................... GAATTCTATACGTTTAGAACTTTCCCGCCA 8101 36 100.0 30 .................................... GTAACACGAAAGGACTTGTCTACAGCTCTG 8035 36 100.0 30 .................................... TAATGACAAGTTATTATTATAGTAGAAGTT 7969 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7903 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7837 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7771 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7705 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7639 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7573 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7507 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7441 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7375 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7309 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7243 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7177 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7110 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 7044 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 6978 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6912 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6846 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6780 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6714 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6648 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6582 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6516 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6450 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6384 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6318 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6252 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6186 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6120 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6054 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 5988 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5922 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5856 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5790 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5724 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5658 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5592 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5525 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5459 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5393 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5327 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5292,5295,5300] ========== ====== ====== ====== ==================================== =============================== ================== 47 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //