Array 1 109913-108011 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUZ01000001.1 Salmonella enterica strain BCW_3053 NODE_1_length_547597_cov_3.30916, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109912 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 109851 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 109790 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 109729 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 109668 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 109607 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 109546 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 109485 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 109424 29 100.0 32 ............................. AAACCCGCGCCCGTGAGCTCGATATGCTCGGC 109363 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 109302 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 109241 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 109180 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 109119 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 109058 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 108997 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 108936 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 108875 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 108814 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 108753 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 108692 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 108631 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 108570 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 108509 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 108448 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 108387 29 100.0 32 ............................. GGAGTATTTGAAATGTACTATAAGGACTTCAT 108326 27 69.0 15 ................T--TCT.C.G.T. GCAACGACAGAATGC Deletion [108285] 108284 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 108223 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108162 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 108101 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108040 29 100.0 0 ............................. | A [108013] ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCAAATGGTCGTTTTTTTAAATTTTGGTTTGTCATGAATGGTGTTGATGCTGAGAGATAAAGTATGATGAAATGAAGTAGTTAAATTTAATTAATTAATGGTATTCATGGAAATGGATGTAGATAGAGAAGCTGCAAAGATTTTAGTGAATCTAATGTAATAACTTCTCTATACAACGGAGTTAGAATAATACCCGTTATCCAACCAATCCAAAACGTTTACTATAATAGCTAGCTTCTCCGGCATCAGATACCAGCACAACCTGTCCGGAAGGGCGATGGTGGCGTTTTCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATTAATGTCTTTTCTGGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAGAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119104-117857 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUZ01000001.1 Salmonella enterica strain BCW_3053 NODE_1_length_547597_cov_3.30916, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 119103 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 119042 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 118981 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 118920 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 118859 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 118798 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 118737 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 118676 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 118615 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 118554 29 100.0 32 ............................. TACGGGCATGGACGGCTCGTACAGTTTTGACG 118493 29 100.0 32 ............................. TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC 118432 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 118371 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 118310 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 118249 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 118188 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 118127 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 118066 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 118005 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 117944 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 117884 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //