Array 1 8934-15071 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNIV01000360.1 Xanthomonas oryzae pv. oryzae strain GD33 scaffold359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8934 31 100.0 34 ............................... TTGCCCAGCTGGCTGCAACCGGCGATTTTACTGG 8999 31 100.0 36 ............................... TGGCGTAATGCTGACGCAGCTAATTATGGGCTGGCG 9066 31 100.0 35 ............................... AGCGCAACATGGTGACGGTCCTGGCGGAAGAGCGT 9132 31 100.0 35 ............................... CCGAGCTATTGCCAGCTTATTGTCGAAGGGTACAG 9198 31 100.0 36 ............................... AGCCAAACGATTGGTGTAAGCCAGTCTGGTAACGAG 9265 31 100.0 34 ............................... CCTCGTTGGTGCATTCGATCTGGCTGCCCAGATC 9330 31 100.0 36 ............................... CTGCCCGAACACTTCGAAGAACCCCCGGTAGAGGTA 9397 31 100.0 34 ............................... CAATGTTGCAGGCCAGCCTGGCCGAGTATCCGGC 9462 31 100.0 34 ............................... TGTGAATTTGCAGCTATGTTGCCCTCAGCCTCTG 9527 31 100.0 35 ............................... GCAGCACCGTAGACAACAAGCAGGCATTTCAGTTG 9593 31 100.0 34 ............................... TTCGTTGCCGTGCTGCTAAAGGTTAGCTGCACAC 9658 31 100.0 34 ............................... CAGCGGGATGAGGCGGAGGCGCGGGCACGTGTGG 9723 31 100.0 34 ............................... TGACACCCTTGACCCAGATCTATTCCATGAGCTC 9788 31 100.0 34 ............................... TGTGCATTTGCAGTTATGGTCCCTTCCGCCTGTG 9853 31 100.0 34 ............................... AGCTGATTACGCCCCCAGCTACCAGACATGCTAA 9918 31 100.0 34 ............................... CTTAATCCCGGGGATGTCTACGCCGCCTCGCCCT 9983 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 10049 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 10114 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 10179 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 10245 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 10311 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 10376 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 10441 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 10505 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 10570 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 10635 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 10699 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 10765 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 10830 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 10897 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 10962 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 11028 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 11094 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 11158 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 11223 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 11290 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 11356 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 11422 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 11490 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 11556 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 11621 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 11686 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 11752 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 11818 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 11883 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 11949 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 12015 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 12080 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 12146 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 12212 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 12279 31 100.0 35 ............................... AACTGAAAATTAACTCTATCTAACCAAAAGGAACC 12345 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 12411 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 12478 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 12545 31 100.0 33 ............................... GTACAGGTCGGGCTGTTGCGCTCTGTAGTACGC 12609 31 100.0 33 ............................... CAGCCCCGGCGTCGGCGGCCGCGTCGAACTCCT 12673 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 12738 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 12804 31 100.0 34 ............................... TCAGCCTCTAGCCTCTCAGCAAGGGACTTAGAGC 12869 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 12936 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 13002 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 13069 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 13133 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 13199 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 13264 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 13330 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 13395 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 13462 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 13527 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 13594 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 13660 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 13727 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 13793 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 13860 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 13928 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 13993 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 14058 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 14123 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 14188 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 14254 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 14320 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 14385 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 14450 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 14516 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 14582 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 14646 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 14713 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 14778 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 14844 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 14909 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 14976 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 15041 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 94 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //