Array 1 220437-220011 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKQF010000002.1 Neisseria macacae isolate MGYG-HGUT-01381, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 220436 32 96.9 33 T............................... AGCCGACCGTTATCTTGAATGGGTTAAGAAACA 220371 32 96.9 34 G............................... AGGGATAAAGGCAACGAATCCCAATGCATCAAAA 220305 32 100.0 34 ................................ AGGGATAAAGGCAACGAATCCCAATGCATCAAAA 220239 32 100.0 33 ................................ CTGCGTACTCTTACACCATCAAGGGCGCGCCGC 220174 32 96.9 34 ......................A......... AACGGACAAATCGAAGGCAAGAATTTCGACTATT 220108 32 100.0 34 ................................ ATCGGCTCAGTCGCAGAACCGCGCATATCTGGAT 220042 32 87.5 0 T..T.......CG................... | ========== ====== ====== ====== ================================ ================================== ================== 7 32 96.9 34 CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATATAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAGGACGCGGAAGGACAGGCAAGACTGCGGCGCGTGGCGAAATTGTGTTTGGACTATGGCGTGCGTGTGCAGTATTCAGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTCTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAGCCAGCGGTGGATGTGTTCAAGGATACGTTGATTGTGTGAATCGCCAACCTACAGTTCTCATGAAAATGCTGCAAGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGTGAATGCGGGTGTAACAGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : GGGCGGTAAAGTGAAGTCATGCCGCCGTCTGTTTGCCAGCCGCCTTCAGGCAGCTATATATCAGTACAACTCAGAGATTTCTTACAACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTATCAATCGGTTTTCAGACGACCTTTTTCAGCCATCAAAATAAGCCCGAT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 97540-97784 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKQF010000004.1 Neisseria macacae isolate MGYG-HGUT-01381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 97540 36 100.0 33 .................................... GATTCTTTCGCTTCCTCATGAGCTGCATCTTCA 97609 36 97.2 35 ...................G................ AGGATCCACACACGGGCATCAGGGACAGTATTGAG 97680 36 100.0 34 .................................... TATTTCTGATTTCAATATCCCACGCATCATCTAA 97750 35 88.9 0 ............A........G.......-...A.. | ========== ====== ====== ====== ==================================== =================================== ================== 4 36 96.5 34 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : AAGGAAGAGGGCAGAAGCCATCTGGCGGGGATGCTGGATATGTTGGCGGCGAAAGGGAAAGGCTGAAACGAGAGATAGGCCAGCAAAAGGTCGTCTGAAATAGGTTGCACATGGTACTCTTCTTTATAGTGGATTAAATTTAAATCAGGACAAGGCGACGAAGCCGCAGACAGTACAGATAGTACGGCAAGGCGAGGCAACGCCGTACCGGTTTAAATTTAATCCACTATAATTTGAAGTGTTCCGGATTCCTCCTGTCAGCCTGAAAGAACAACAAATCTGTATCAGCCTCAATAATTCAAAAGCAGCGTTGTCGAATGTAAAATACATGGCTATAATCCGCATTACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGATTTTATTAAATAATGTCTTTGTTGGTTAAGGAAAAATACTAACCTTTCTTAACTGTATAGAAGATTGAAAATAATGATTTTTTTTGACTGCGTGCA # Right flank : CTCAAACGGCCTTGATGATTCATCCCATCAAGGCCGTTTTTGCGTCATGCGTATTTTCAAGGTCTTAAAGAGGTCGTCTGAAAATGGCTTTAAGGGCATCTCAGGATATCGGTTTTCAGACGACCTTTTTCAACGATTTGAGGGTCGTCTGAAACGCCCGTCCTAGCAATAAGTAGCATATTCAAACTATTTCGTTTCGGGTATAGTATCGCCTGAACAGACTTTCAGGCAGGCTGACTGGTGCGGAAGCGACGTTTTATATGTTATCCCTAAAGATTCCCGCGCCGCCAATCGTCAGCCCGCCCTAAACCGTATGATGCGACATTGCTTTGGAGAAGCGCTGAAATGTTCAAACGTCCTGAAGAAATCATCGTCCTTGTCCTTGCCGTCATTTGGGTGGTGCTGACTTATTTCATCGCCGCCTTTCTCGGCGCCGATACTTACACCATCTTCCTGATTACCGGCCTGACGCTGGTATGGGCAGGCGTATGCTTCCGCCT # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 136118-135522 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKQF010000004.1 Neisseria macacae isolate MGYG-HGUT-01381, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 136117 36 100.0 34 .................................... ACATGTTTTGCATACGTCAACACTGCATTCTTGG 136047 36 100.0 34 .................................... TTCACATTAGAGTCGCCTTCCGTGGTGAGGTTGG 135977 36 100.0 34 .................................... TGAATGCCTTTCATGTTTGTTGACAAAGAAATTT 135907 36 97.2 35 ...................T................ ATTTCAGCCATGATTTCCTTGTACCAGTATCTTAG 135836 36 97.2 36 ...................T................ ATAACTTCTGCCGAAATAAAATCCAAATCTGACTCA 135764 36 94.4 32 .......A...........T................ TTCCTGCCCCTTCCAGACGACCGCCTGATTCA 135696 36 100.0 32 .................................... GCATAAGGCTAATCAGGTTTGCCGCGCGTTTA 135628 36 88.9 35 ...................TC.A............T TCCTTGGCAACCCGGTCATAACCATAGAAGCCAAA 135557 36 77.8 0 ...A..........T.....C.......G..TCA.T | ========== ====== ====== ====== ==================================== ==================================== ================== 9 36 95.1 34 GTCGGAAGACTTGCCCCACGAATCGGGGATTAAGAC # Left flank : GGCAAGAACGAATGGAGGAGCAACCAAACAAGATCATAGGCAACCAAGCACACGACAAACTCTATCAAGAATGGAAGGCAGCCCTGCAAACCGCCACAGAAAGCCCCGATTTCAACGCGGCAGAGAAAAAAGAAATTGCTGACGCGTTTGCCGTCAAAAAGATGATGGCAAAATACGCGAAATGGCTGACCGACAAGCGCGGCAAAGAGCTGAAACCCATCCTGGCGAAGCTGCGCGGCGAATAGCTTTTCGGCTTTATCGAAACCCAAGCTTTTCAGACGACCTAAAGCCGCAAAACGGTTAAAAATCGTTGTCGAATGCAAAGCGCACGGCTATAATCCGAAACACAAGTTTTCCGGCGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAAGGTTTTATTAAATAATGTCTTTGTTGGTTAAGGAAAAATGCTAACTTTTCTTAACTATATAGAAGATTGAAAATAATGAAATTTTTTGACTGAGTGCA # Right flank : CTTTTCAGACGACCTCAAGCCTGGGTCGTCTGAAAACGTAGGTCGGATTCTTGAATCCGACAAATATTCCGACGTTTCTACATAGCAAAACAGCCTTGATATTGCATCAATGCTGTTTTTGTTGGCGGAGGGTTTGTGTGAGTTCGGGGTCGTCTGAAAGGCGGCTTCGCGCTTACAGTTTGCCCATACCGCCCAAGATGATGCCTTCGGGCAAGGCGGGTTTGCCCAGGGCATGGATTATGCTGCTATTGGGCAGGGGATAGCAGCGTAAATTGTCCAGTCGCCGCAAGCCCCGATTTCAGCGCGGAGCAGAAAGCCGAAATCGCCGTCGCGTTTGCCGTCAAAAAGATGGAGCAGGCGTATAAAAACTGGCTGACCGGCAAACACCCCAAAGAGCTGAAACCCATCCTGGCGAAGCTACGCGGCGAATAGATTTTCATCTTTATCGAGGCACTAGCTTTTCAGACGACCTAAAGCCGCAAAAGGGTTAAAAAGCGTTG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACGAATCGGGGATTAAGAC # Alternate repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //