Array 1 5969-6212 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV808301.1 Rothia sp. HMSC069C10 Scaffold176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 5969 29 100.0 43 ............................. TTGAGGCCAAACTTGGGGGTTGCCATTCATGGTCTTTGCGGAT 6041 29 100.0 41 ............................. TTGAGGCCGGAGTCGCCGTCATTATTCTCTACTCGCTGGGG 6111 29 100.0 44 ............................. TTGAGGCCGGTGGTGGATTTAGCCTTGAATTTGAAGGTGGAGCC 6184 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 4 29 100.0 43 ATTTCCCTTCCTTTTCGGAGGGACTTTCA # Left flank : TTTTGACAAGGTATTTACTGAGGAGATGCTGGCTGGTGGTTATCAGAAGAAGTATTTCCGTGCGGTGTCTCGTTTGACTGCGTTGGCTCGTGAGGGCATGCTGGGTGAGGAGGCGGAGCGCTAGTTCCGCTGTTCGCCGGGGCCGAGCTTTGGCCGGCTCGGGTTTTGATGCGCTGTTCTTTCTAGTCCCGTGAGACTCGAAGCTCGCGCGGTTTGCATGGTTAGCTTGGTTAGTCTGGTTTACCTGAACCGCGCCAACCCCTCTCATACGTGAAGACCCTCGCCGGGTCGCTTAGGAAGCACCCGGCGGGGGTCTTTGTGTGAGCGAGAACCTGGTACGTGACGGGAACATGGCGTGTCGCTCGCATGGTTTCTTCCCTTGCCAGGGAGTTATGCGGGGGTAGATGAGGTTGGAGTGTATAATTTTGCGTGTAGCCTCCACGAGGTTCTCGCGAAGCACCCGTTTCTGCCGCATGGTTGCGGGCTATTTTCGGGTAGCT # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTTTTCGGAGGGACTTTCATTGAGGCTGTTCACTCAGACCGCCGCCGAAGCCTGGTTCACTGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGCTTGAGGCTCTGAACAAGGCTGTCGAAGAATCCCATGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGCTTTCACGACAAGAAGCGGCAGGAAATTGAAGCCAGCGGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGCAGGTAGAGTTACCGAAAGCGACTAGGGATATAACGGGATTTCCCTTCCTTTTCGGAGGGACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 7327-6377 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV808301.1 Rothia sp. HMSC069C10 Scaffold176, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================== ================== 7326 36 100.0 33 .................................... CCAGCCCGGGACCCGGCAACACCTTTTGCGAAG 7257 36 100.0 35 .................................... ACAATCCATTCAAAGACGGGCTTAACAACATTTTC 7186 36 100.0 36 .................................... TTGTCACCTCGTACCCCTGAGCGTGAGCGCGATCAA 7114 36 100.0 37 .................................... CAGGCCGTACCGTCTCCACATCCAAACCAGGCAAGAA 7041 36 100.0 37 .................................... ACGTCAGGGGAGCCGCTACGATATTCACATCAACTAA 6968 36 100.0 37 .................................... ACGGCGACGCATACGCCCACAAGAACTAGCACCGCAC 6895 36 100.0 37 .................................... TGCTCATGTGGAATGGTATGTGATTTTCTTACGTGTT 6822 36 100.0 36 .................................... TGATCAGGCAGGTTTCACCCCCGGGACCGATGCCTG 6750 36 77.8 83 ............................NNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 6631 36 75.0 37 NNNNNNNNN........................... CCCGTTATATCCCTAGTCGCTTTCGGTAACTCTACCT 6558 36 100.0 38 .................................... CCGCTGGCTTCAATTTCCTGCCGCTTCTTGTCGTGAAA 6484 36 100.0 36 .................................... CATGGGATTCTTCGACAGCCTTGTTCAGAGCCTCAA 6412 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================================================================== ================== 13 36 96.4 40 GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT # Left flank : AAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTTTTCGGAGGGACTTTCATTGAGGCTGCCGATGATGGAACGGCCCGGCAGAGTCAAAGGTTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGCGCACAGGCACAGCCTATGCAGGGTGGCTATGCTCAGGTTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGCAGGGTAAGAAATCAACCTCTTCCCCCTTTGAAAATTTCCCTTCCTTTTCGGAGGGACTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAGTCCCTCCGAAAAGGAAGGGAAATGAGGGTCTAGGGAGCCTGATTTGTCTCTGGATTTTCAG # Right flank : CAGTGAACCAGGCTTCGGCGGCGGTCTGAGTGAACAGCCTCAATGAAAGTCCCTCCGAAAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAAGTCCCTCCGAAAAGGAAGGGAAATGGCTCCACCTTCAAATTCAAGGCTAAATCCACCACCGGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCCCCAGCGAGTAGAGAATAATGACGGCGACTCCGGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATATCCGCAAAGACCATGAATGGCAACCCCCAAGTTTGGCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATAGCTACCCGAAAATAGCCCGCAACCATGCGGCAGAAACGGGTGCTTCGCGAGAACCTCGTGGAGGCTACACGCAAAATTATACACTCCAACC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //