Array 1 18023-17202 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGVJ01000010.1 Escherichia coli strain SCEC020005 NODE_10_length_171487_cov_93.7658, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18022 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 17961 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 17900 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 17839 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 17778 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 17717 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 17656 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 17595 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 17534 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 17474 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 17413 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 17352 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 17291 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 17230 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 37289-36101 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGVJ01000010.1 Escherichia coli strain SCEC020005 NODE_10_length_171487_cov_93.7658, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37288 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 37227 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 37166 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 37105 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 37044 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 36983 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 36922 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 36861 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 36800 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 36739 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 36678 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 36617 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 36556 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 36495 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 36434 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 36373 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 36312 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 36251 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 36190 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 36129 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //