Array 1 27671-25927 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSLQ01000029.1 Staphylococcus pseudintermedius strain GL0011B NODE_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27670 36 97.2 29 ............................G....... GAAATTTGCTGATGAAAAATGGCAATCTA 27605 36 97.2 30 ............................G....... GAAGCCCGCTCTGTTTATACGGCAGTAAAA 27539 36 97.2 30 ............................G....... AAGGCGGTAAGCGTTATATCGAAATTGAAC 27473 36 97.2 29 ............................G....... ATGAAATTCATTACACAAGCTTGAAACAA 27408 36 97.2 30 ............................G....... TTTAAAAATGGTTGCAAGCCTTGGAATGTC 27342 36 97.2 30 ............................G....... GCCAAGACTTTAGTAGAGCAGGCAAACGAT 27276 36 97.2 29 ............................G....... TAAATCATTAGACAATGCGTGTCGTGTTA 27211 36 97.2 30 ............................G....... ATATTCTGTGTTATTATCATGTGAAATTCT 27145 36 97.2 31 ............................G....... AAAGTATTCTAGTAGATCTTGATAAGCGTAA 27078 36 97.2 29 ............................G....... GAGATGACGCTTTTACAAAATCTTTGGCT 27013 36 97.2 30 ............................G....... CAAAACTGAATAGATACGATAGGTGTTTCG 26947 36 97.2 29 ............................G....... AATGCTGGCACAAAAGATGGTGGACGTGA 26882 36 100.0 30 .................................... TTACGAGCAGTTTTTTATTACACTCGGCCG 26816 36 100.0 29 .................................... TTTCTGTTTGTTAGTCTCTGTGTAGTCTA 26751 36 100.0 29 .................................... CAAAGCCCCAAACTTCAAATGGTGTAACT 26686 36 100.0 30 .................................... TACCTATATGCTGAAGTATCATACGCTCCG 26620 36 100.0 29 .................................... ACAAATTGGACAATGAGTACAGGTTGAGT 26555 36 100.0 30 .................................... TGAATCTCGTATAGCATGGCATACTGCTGA 26489 36 100.0 29 .................................... AGAAAAGATGAACACAGGTGATGAAGCGT 26424 36 100.0 31 .................................... ACAACGGATATGAAGAAAATATACAGAGCGG 26357 36 100.0 30 .................................... CAAAAGTTTGATGGCCACGTATGGGTTTCT 26291 36 100.0 30 .................................... GACAGAATTACAAAAGGAATTACGCAAACG 26225 36 100.0 29 .................................... TCCTCTTCATCAGTTCTGTCTGTTTATTA 26160 36 100.0 30 .................................... AAGGTGAAATGGTCATGAAGATTAGAAGTG 26094 36 100.0 30 .................................... AAATCAAATGGAAAAAGAAGTGACAGGCTC 26028 36 100.0 30 .................................... GTTATGATGTTTGGCGATATGGGTCGTCGT 25962 36 77.8 0 .........T................AC.TC.TT.A | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 97.9 30 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCCTTCAAAATAAATAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGCC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //