Array 1 661-116 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIA01000074.1 Natronococcus jeotgali DSM 18795 contig_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 660 37 100.0 36 ..................................... TTAATCGACCCAGTCATTAACCGGCGAGACGCGGAG 587 37 100.0 37 ..................................... TCAGTAAGCGCGAAAGAGCCGGCCCGGGATGGAGTAA 513 37 100.0 35 ..................................... AACCCGGTGAACTTGTTCCCGCGCATCCGCATGGG 441 37 100.0 36 ..................................... ACCATCAGCGGTCCGTCGAGGATCTCCACGGGGCCG 368 37 100.0 35 ..................................... TGATATCCACAAACCGGACAGTCCCAGTCCACAAT 296 37 100.0 36 ..................................... TCCCATACCTGGCGCTCGCCGGCGCCGGTCGGGATC 223 37 100.0 34 ..................................... AGGATGCCATGTCCGAGGCCGAGGACAACCGACG 152 37 97.3 0 .............................G....... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 99.7 36 GTCACAACGTAATAGCGTCCCAGCATGGGATTGAAAC # Left flank : TCGCTACAGCGTCGATGATCGTCTTTCGGTCACTATTGATGACCCAGTATCCGCGTTCGCACGTAAGCCCATCTTCGTTGGTCTGGTACGGTCCTGTCTGTACGAACTCGCTGAATACGAATGGGGGTGCGTGTGGGAGTTGGTGCAGCTCCGTCGCTAATTCGGGTTCATACTTGTTGAGTGCGTCGTAAATGAACGACTGCATACTCAGATGATAGTTCCAGGGGAGGTGGAAGCGTGGATTGCTCCCACTGTCAGCACTAATGTACAGCCGAATATCCTAACACCTCCGTTGATAATAATTGGAACACAGTATAGGTACTATGTCACTAGCCTATATCATTGATGGAAAGAAGACACAAACCAAATTGACTCAACAGATGACAACACTTTTCATCGACCTTTATAAATACTCTGTACGGTAGGGGTCCACGAAACTAATCCGCTACACAGTGGAATCACGTTGCTCGAGAGAGTCGCTTCCAAGATTTGAACCCCCT # Right flank : CATCAACATCCACGCCGACGAGCGCAACGGCATCCAGGTCACAACGTAATATGCCTTGTTTTGCCGCCGATTGACGACAACTTCAGACGCTCTCGCAGGAAGCTTCCGTCACATTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAACGTAATAGCGTCCCAGCATGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 7593-8137 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIA01000074.1 Natronococcus jeotgali DSM 18795 contig_74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 7593 37 100.0 35 ..................................... GACACGGTCCGCCGGGACTACTCGGGCCTCAAAGG 7665 37 100.0 37 ..................................... ACGCAGACGAGGGTGATCTTACCGTGGAGGACTACAG 7739 37 100.0 37 ..................................... ATCCACTGATCATCATCGTCTTCGACGCCAACCACCC 7813 37 100.0 35 ..................................... GATCGAGCAACGGCAACTCGGTGACGCAGTCTTCG 7885 37 97.3 34 ............................A........ TTATCGGTAAGGTAGATCTCCTCGCTGATCTCGG 7956 37 97.3 35 ..........G.......................... GCGCTGCTACGTCGAGGATCAGATCGACAACGGCT 8028 37 100.0 36 ..................................... AAGGAAGGACCGTCCCCCTCCCGAAAATTTCCCGCG 8101 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 99.3 36 GTCGCAACGTAATAGCGCCCGAAAACGGGATTGAAAC # Left flank : ATCAGCGAGGATTGGCTGTTTGGTCCCCATCGCCCTGTTACGGAGGATTCCAACGGAACGGACAATATCGAACTCCGATCAATATCGTCCTACAGAGTACCCGTACTGGCAGCTAGCTACACTGAACCAGATGGAAAGACATGGTCGCCTGAGAAAAGGTGGGAGAAAGAGCATACCTGTTCTCGATCCCAGTGTTCTGTGACAGCGACTGATACGGCATGTCGGTCTGATCTCTGGGAATTTATTCAGGACTACGCTATCGAGATCCCCGCATGGTGGATTCGTGACGGTCTCAATACAGAAACGTTCCCCGAGAGCAAGGACGAGATGCCGATATCGAAGGCGGAGGTTGCTTACTTCTATGACCGAGGTATTCTGCGAGAGTAAGGATTTTCATGGACCCACTTGAATAATGTGTACGGTAGGGGTCCACGAAGCCCGAGGTTCAATCGGCGTCTCGAGAAGCCAAAAAATGGTCTATCCACCGATTTCAGCCCCCT # Right flank : TGTACGGAGACACCAACCCTCTCCGTTATCAAAAGGGTCGCAACGTAATAGNGAAAACGGGATTGAAACTGTACGGAGACACCAACCCTCTCCGTTATCAAAAGGGTCGCAACGTAATAGCGCCCGAAAACGGGATTGAAACAAGTCGCCGTAACTGTTGTCACTGAGGTCAACGACTTGTCGCAGGGCGGTAGAAACCCACAACGGGATTGAAACGGGACGGGCCAAGGCCTTCGGGCGTGGCGGTTCGGGTCGCAGAGCGATAGGTAATGACGGTTGGGGGCTATTGTATGATACGCTCTGATCTAAGTAGGCGACTGTCCCGGAAAGGGGGGTTTCCGGGACACCTGATTTTCCCTCTCGTAACCCTTATTGTACGCATTTATGTAGGGTTAAACCAGGGATGCCAGAAACTACCGTTTCGGTCACCGAGTCAACGACGACTAACCCCGACGGCGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACGTAATAGCGCCCGAAAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 1 761-2550 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIA01000155.1 Natronococcus jeotgali DSM 18795 contig_156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 761 37 100.0 37 ..................................... CTCAGCGTGTTATCGCCCGCGCGCTCGATTTGGGAGC 835 37 100.0 35 ..................................... ACGAACCGACGACCAACGACGACGAGTCGGATGCG 907 37 100.0 36 ..................................... TGTGCATCGACGTATCCCGTGGATGGTACCCGCGGA 980 37 100.0 35 ..................................... ATGCCGTCGAGGTATCTACTGACGAAGGACGGGCG 1052 37 100.0 36 ..................................... ACTGTCGTCGTCTCACGGTTGTCATGGTTGTGGACC 1125 37 100.0 39 ..................................... ACGAAGGAGTGTACCTGCGGGGACTGGGAGTGGAGACAG 1201 37 100.0 38 ..................................... TTAAAGGTTGTCAGTATGGCGTTATCCACCTCTTGGTG 1276 37 97.3 38 .............A....................... TTGGCGACGAGGATCATAAGCCCGATACCGTCGGTCCG 1351 37 100.0 36 ..................................... TTGTCGGCGTCCTCGACCGGCACGAGCGGGACGATG 1424 37 94.6 37 ......................C.A............ ATCCGCCTCGCGCGCAACGCGCTCGACCAGATCGAGA 1498 37 94.6 35 ......................C.A............ ATGCCGTTTGTCAATAATGTTGATGAGCTCGACGA 1570 37 97.3 37 .C................................... AGCCAGTCGAGGGCATCGAATAGGCCACCGTCGCCGG 1644 37 89.2 37 .......G.....A.......A..A............ AAAAAGTCGATGTCCCGGGCCAGCTTGTCATCTTCGA 1718 37 89.2 36 ....G.TG.....A....................... GAAGGTAGGTCATCGTGGGGAAGAAACGACTTAACA 1791 37 89.2 36 ..............A.C.....C.A............ ATATGGACGGCCAGGCCCCATCGGCCATAGCTCGGT 1864 37 100.0 34 ..................................... ACTTCGCCATACAGCGAGTCGGCACCGGTCCCGA 1935 37 94.6 38 ......................C.A............ ATCCAGGCCTGGGTCTCGCCCCCCGCGTCATCGGTGAT 2010 37 91.9 38 ...............G.....A.C............. CCACAGCGCTTGCATTCTAATCCATCCTCTACTGTCAC 2085 36 91.9 34 ....-.................A.T............ TACCAGCCGTCGAGCGTGACCGTCGCGTTGTCCT 2155 37 83.8 35 .C............A..G...AT.A............ ATGTAGTAGTCCTCACCAGCGCTGTAGACGCGCTC 2227 36 75.7 38 .C..G.G......-....G...A.A..........GT TTGTCGATCTCAGCATCCACATCTCCAGGCGTGACGAG 2301 37 86.5 37 .C..................A.A.A...T........ TACCAGGCTTCGGGAGGATCATCCAGGTTTACCAGCG 2375 37 83.8 32 ..............A.C....AC.A...........T CCTTCGGCACCCATGCGACCCGCCTGCGTTGC 2444 36 86.5 35 ......GC......A.......A.-............ TATGTGAAGGCGTCCATAGCGTCGTCATTACGACC 2515 36 83.8 0 AC.................A.-A.............T | ========== ====== ====== ====== ===================================== ======================================= ================== 25 37 93.2 36 GTCACAATGTAATGGAAACCCGGTCAGGGATTGAAAC # Left flank : GGCCGGAAAGTGACAGTGATGGTATTATGAAGCCTGTGATTCGTGATGTGTCGTCGAATCGTCGATCAATATTTGCTGAAACTTATGATCGGAAGGGAGAGGCAAAGACGGTTCACGAGTTATGGTCGGAGTACCATAGCTGTGGATATAGTGACGAGTGTGGTGTGCATCGGGAGTCGTGGAATGGCTGTAAGAATGAGTTGAGTGAATTCTCGGAGAAATTTTCGATTCCAGTGCCGGCGTGGTGGTTGTATTCGGATTCAGTTGATTCGGGAGGGGTGTTTCGAGTGGTAGACAAAGAGGGGGTTCCAATAGATGGGACTTCGATGCTCGGAATCACATATAGTTATGAAGACGGGGTTAAGATTGATGAGTAGGTCTACCGACATTCGTTCGTTGACCTTTATATACTGTCTGTACAGCAAGGGTCTATGAACTCGGCTCGCAATTTCAGGTGAACATATAAGTTTAAAGACCTTCTACTGCCATCTAGACCCCCT # Right flank : TCAGTCCTCGTCCTCGTCACAGACGACGTGGCGGTTACCACAATATAAGAGGGTGTCATAGAACGGGTCTCACACCGACCATGTGGCTACCCAGATTCGATACGCACAGGTCGAGCTGATAGCGGAGCAGCAATCGGTTTCTCCGATAGCTGTCAAAAGAGGCCTGCTGAATATAGAGTATCAATGCAGTACGACGACTCCGTTTGTTTCACATCGAAATCAGTGGACTATCTGCTCACTACACGTGCATATCTTGTACGACGGCTCGGAATAGAACTGCGGGACATAATGCTGGTTCTTGTATTCCGGCATTCCGATATATCGACTGGTTCCTCTAATATGAATTGAGCGGTCAGTCGACACCAACTGGCGAGAATGAGTGGAGATGCGCTTGGCTTAACACTTGCAGTGAGAGTTGACTCTCCCTATAGTAGGTACCTATCGGATTTGTTATCTCTTGAAGGGGAGGGAAAGGGATCCCATACATGATCCCTGCCAAC # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:0, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATGTAATGGAAACCCGGTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-49] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //