Array 1 1041426-1041091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVW010000001.1 Streptomyces halstedii strain LGO-A4 A4_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1041425 29 100.0 32 ............................. CGTCCTCACGCAGACCGTCCACGATCCCGTCC 1041364 29 96.6 32 ............................G GACCGCGACGAGCGTCCGACGATCTTCCTGGA 1041303 29 100.0 32 ............................. TGGCGCTGGGCTACATTCATGGGCCAGCACGG 1041242 29 100.0 32 ............................. CGGTTCGTTCGCATCAGGTGCGTTTGCGATTC 1041181 29 89.7 33 ...........T..T......G....... GAAGCCGAAGCGCTCCGGGCGCGGGGCTTCCTG 1041119 29 93.1 0 ...........T.............C... | ========== ====== ====== ====== ============================= ================================= ================== 6 29 96.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : ACCGCCCGGGTGGACCACCAGCAGGTTCGGCCCGGAACCATCGTCCAGGGCGGTGACGGTCCGGCCGTCAGCGGATGATGCGTGAAGCTCAGTCATACGTACAAGGGTGTCGGAGCTGCCGACAACATGCCCGCAGGCGATTGAGCGTCCCGCGCGACTTCGTTGTCCGCTTCGCTCCGTGCATGGGCGCTCGTCCGATGGTGTGCTCCCGCGAGATCTCGTACCTGTTCGGCGTGCCTGCACACCGCGTCCGGGCGAAGATGCGTCACGGGGTACGTCTCCGGCCGCAACAGCCCGACATGGGTGCGCTGGAAAACGCAGCAGATTGTGTTGCCGAGACGGCTGATGCCTGATAACTGGTCTTTGGCGGCGGGAGCTTGGCTAGGCTGGCTCTCCGAGGGTAGGGGGTCGTTACGTTGAGGCTTTTGTGCGTAATGCCGGAGTCGGCGAAAGTGCTTCAGAATGACCGGCCGCGCAGGTAGACCCGCTGGTCACGGAGT # Right flank : GACCGTTGAAAGTCGGCGTAGTTGAGCGTGTCCTGTTCCCCCGCGTGAGCGGGGATGAACGATGTCGCAGCGCACAGCGACCGGATCACCGTCCTCGCGGCCGAGCCGGAACCGGCCCAGGAGGTGATCGAACGGCTCCTGGACACCGGGCACGGGTGTCACCGGACCACGCACCCGGCACCGCGTCGGCCGGGGCGTCAGTGACGAGGTCTGTGTGGCGGGCCGCCCGATACCGCGATCCTCCGGGGTCTCGCGGCCGGCCGTGGTCTCGCGGTGGGCCGTCCGTCCCAAGGGGCCATCCGTCGCTGGGAGTAGGTCCCGCGCCTCAGGTGCCCTCCGCGCCCGCTGGTTAAGGTCGGTCCGTATGGAGACCTCAGGAACCGGTCGTCGCCCGACGGCGGAGCGCACGCGCGACGTGCTGGAACGGCTCGCCACCGAGCGGGACGTATGGGTGGCGACGGCTCACCCTGATCACGGGCCGCACCAGGTGCCGTTGTGGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1045485-1045088 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVW010000001.1 Streptomyces halstedii strain LGO-A4 A4_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1045484 29 96.6 32 ......T...................... GCCTGGGACTTCTTGACGGTCCCGATCTTCGG 1045423 29 100.0 32 ............................. ACCGGCAAGACTGTGCTGCGGGTCCGCAACGC 1045362 29 96.6 32 ............................T GATCCGCGTCGGTGTGATCGGTCGGTCGGTCA 1045301 29 93.1 32 ........................GT... CTGACGACGATGGGCAAGGCCCTGGGTAACGG 1045240 29 82.8 32 ............T.T......G.C.T... GCTATGTAGGGGGCGCCTCGCCGGTATGTGGC C [1045230] 1045178 29 86.2 32 .......T.....G..........GT... GTGGCGGCGGCTCCGTCGAGCAGGAGCTCGCG 1045117 29 79.3 0 T...........T...........GGTG. | G [1045104] ========== ====== ====== ====== ============================= ================================ ================== 7 29 90.7 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CGCATGACGTACAAGTGCCGGCTGAGTGCCGTGGCGAACTGCCTGGCATCCCGGTGCAGTTGTGTGTAACAGCTCCGACGTACCTCACGATTCTCGCGAGCTTCCTGGATGGCATGGGCCATCTCCAACTCGCGCTTCTTGGTGCGGTCGGCGCCCCGCTGGGTAAGCAACGCGCCCCCAAGCGTTCCCGCTACACCAGTGATCGCAATGAGTACCGCCCCCAGGTCCATTTGATCAGCCTAGACCGCGTCATCTGGCTGGCCGGATAAGGGCGGCGATCACGACTCGCCGCCTGAATCGCTGCGAGTGCTGTTCCGAACGAAAGGCCTTAATTCTGGCTATGGGGGTTCCTGTATGGCCGGTGGTCAATGGGACAGCCCTTAGGCTGGCCCCCGAGGTAAGGAAGGTTCGTCGCGTTGAGTCTTTTGCGTGTAATGCCGGAGTCGGTGAAAGTGCTTCAGAATGACCGACTGCGCCGGTAAACCTACTGGTCGCGGAGT # Right flank : CGTGTCCAGTTGCGGCAGGTGTCGTCATTGGTGCGGGGGTGTCGCCCGCGGTGTCGGCGCGCCCGCCCGCCGCAACTCGTATCCGTATTGCGGCAATTCGAGAAGTTTACCTACAACTGTGCTTATGAGCCGAAGAGTTGCAACATCTGAGCAGGGCCCTCAGTTCGAACTTCGTTGGGGTGGGGTCCACGTGACCGTCCAGCGCGTTCCCGCGTGGCTGATCACCTTGATGACCACGGCCGGGAGTGCTGCGGCCGCCTGGTGGGTGGGTCGCTGACGGGCGACTCCGACCTCGGGTTCCCGGCCGCCCGAATGCGCGGCCCGAGCCCGAGCCGCCGCCCATGGGCGGAGCGCATGCGTGCGGGAGCTTCCCGGGAGGTGCGAGTGGCGGGCGGTGTCGGCGGGCGTGTCCGGCACCCACGCCCGGTCACGCCGGACGGCCAGGCTCCGTGGTCGCGTTCAGGCCGGTCAGGAGCAGGTCGAGGCCGGTGGTGAACTGG # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1048517-1048305 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVW010000001.1 Streptomyces halstedii strain LGO-A4 A4_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1048516 30 96.7 31 .............................C CGATCAGGCCGTCCATGAACACGAGCCCGGC 1048455 30 100.0 31 .............................. GCCGCTGGTTCTGGGCCGGGCAACCCACCAC 1048394 30 96.7 31 .............................A AGGCCACGCTGTATCGGCCGGAGAATGCCCA 1048333 29 90.0 0 .....................G...-..G. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.8 31 CTGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : CCACGGTCCTGTCCTTCTTCTCGCAACCTGACATGGCGTACGTCGAGAGTGCTTACTCCGGGGAACTGGTGGAGCATCCTGGAACCGTGGCCGAGTTCGCATTGGCGCTTGACCACCTGCAAGCTCTTGCGCTCTCGCCTCAGGCGTCTGTCGACTTGATCCGCTCCATCATCGAGGAGAAGTACTGTGACTCCCGACTTCCGTCCCGGGCTCGGCGCCGTCGCCTGGCGCAGGTCCAGCTACAGCAACGGGCAGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTCTCCGGTGTGCTCCCAGTCCGCGACAGCAAGCGCCCGCAGGGGCCGGCGCTCGTGTTCGGGGCGCCGGCCTGGTCTGCCTTCGTCAACGAGGTGAAGGCGGACCGTTCCGCGTAAGGTAGCTAGCCAGGTTGGGTTTTTTGCGTGCAATGCCGGAGTCGGTGAAAGTGCTTCAGAATGACCGATCTCGCTGCTAAACGCCCTGGTCACACAGT # Right flank : GCTCGCACCGAAGAGGTTGGAGCATCCTGGAACCGTGGCCGAGTTCGCATTGGGGCTTGACCGCTTGTAAGCCCTTGCGCGCTCGCCTCGGGCGTATGCCGGCTTGATCCGCTCCGTCATCGAGGAGAAGTACTGTGACTCCCGACTTCCGTCCCGGGTGCGGCGCCGTCACCTGGCGCACATCCAGCTACAGCAACACGCAGGGTGGCGACTGCGTCGAGGCCGCTGACGGATTCCCCGGCGTGCTTCCGGTCCGCGACAGCAAACGCCCGCAGGGACCGGTGCTCGTGTTCAGGGCGTCGGCCTGGTTCGCCTTCGTCAACGAGTTGAAGGCGAACCCTCCGGCGTAAGAAAACGAGGTGCCGGGCGTGTGAGCGTCCAACATCCTGGGAGGCGTGAACGTCCAAGTGACAACGCCCCGTTACGAGATCCGCGCCCAGCACACCGCCTCGACGGTCACCGTGTATCAGGCGTACCCGCCCGCCATCGGGCTGCCCGCC # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2127946-2127308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVW010000001.1 Streptomyces halstedii strain LGO-A4 A4_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2127945 30 86.7 31 .............AC.........A...T. TGGCCCAGAACGTCGGAGATCACCAGGACGA 2127884 30 90.0 30 .............AC..............A GCCGTGGCACGACGAAGGCCGCATCGCCTT A [2127860] 2127823 30 90.0 31 ..................A..G..T..... AGCCCGCCGGCGACACGTTGCTAGGCCCCGT 2127762 30 90.0 31 ........T............G..T..... ACCTGGGGTCCGTCCGGTCCCTCGTCGCCGT 2127701 30 96.7 31 .............................C GAGTGTGGATCGGGCTGATACCCCGGGCTAC 2127640 30 100.0 30 .............................. GTTCGTGAGGTTGAGGTCGTGCGCCATGGG 2127580 29 90.0 31 ......T..............-..T..... CGCGTTACGACGCGACGGTCCTTGACCGAGA G [2127565] 2127519 30 90.0 30 ...............A.....G.......C CCCCAGCTTCGAGACCGGAGCGAGTGCCGT TG,T [2127493,2127503] 2127456 29 73.3 31 .C........TA..C-........GT...T GCATGGGTTCCCCCTGGAGTTGCTGTCTGTG G [2127452] 2127395 30 86.7 28 .............AC.......C.A..... TGACGATGCCGTGCGCGGCACCCGGACC 2127337 30 73.3 0 GG......G.TT..........G..TT... | ========== ====== ====== ====== ============================== =============================== ================== 11 30 87.9 30 CTGCTCCCCGCGCGTGCGGGGATGCCCCCG # Left flank : GCCATTACCTTATCGGGCCACGTCAATGCCCCCGGGGGGCGCGGGCCCGAGGCTCCGGGAACACCCCGCCGATACCGCCACCCGACGCCGGTCGGCACGGCCTGACCCGGCCGGCCCCCGCACCACACCAACCGCGAGCCGCGAAGCGCTGTTCCTCCGCCGTGGACCGGCGAGGCCCGCGCCTTGTCTCCCACGAGCCACTTCTGCCGTACCGCGTCGAACGGTCCGTCGGCCACGACACGGCGTCAGCCGAAAGCAGAGGGGCTGGGCCCTTCTCGCCGGTTTCACCGCGGTGCCCTGGGTCGTGCTTCGCCGGTCAGTGAAGGGTGGGTGCCCATAGAGTTGGGTTCACTTGCTGTCGCGGTCGCTGGGGTGAGAGAAAGGGCTTCGGTGCCGGTGAGGGGAGGTGCTCGATCGTGTCGCCTTCGCGTGCTATATCGGATTCGATGAAACTGCTTCAGAATCGACACTCTCGCCGGTAAACCCGCTGGTCACGCAGT # Right flank : TCCCGTCGGGACGGCGAACGCCGAACCCGCCCCGTCCCCCATCCGAGCTACGCGCAGGTGTCCACCGTGAGGTGACGATCCGTGGGCGCCCGATCCGTAGCGTTCACGTCAGTCGCGGCGCTTGGGCCGTGGGTCTGACGAGGGGGTTCTCATGAGGGTGGTCTGGCAGGTCCTGGCCGTGGTGGCGGTCTCGGCGATCGGTGGAAACGCGGTCAACGCGCTGGACGGCAGTCCGTGGCTCACCTTCGGGCTCGGCCTCCTGGTCGCCGTGGTCTCCGTGCTCGTCTACGGCTGGGTGGTCCGCAGGACCGAGCACCGGCCGTCCACCGAGGTGGCGCGGAAGGGCGCCGGGTCCGCGCTCGGGCGGGGGACGCTGATCGGGGTCGCGCTGTTCGGGGTCGTCATCGCCAACATCGCCTTCCTGGGGCACTACGAGATCCACGGACTCGGCTCGGTGACGGGCGCGGTGGGGCTGGTCGGCTTCATGGCCGCCGCCGCGG # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGCCCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //