Array 1 9528-11357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSTJ01000029.1 Vibrio cholerae strain 2012Env-92 NODE_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9528 28 100.0 33 ............................ ATTTGTTCTGCTATCGTGTAGTTCTTATCCCTT 9589 28 100.0 32 ............................ TCGATTCTAGATTTCCCATTGGTTAGATATGA 9649 28 100.0 32 ............................ GTAATGAAAACCACCGATTCGGCGCGAATTGT 9709 28 100.0 32 ............................ TTCCCAGCGCTGCTCGACGTTGTTGTACACAT 9769 28 100.0 32 ............................ AGAGTGGGAAGATTATTTGGCGCTGCCAGAGT 9829 28 100.0 33 ............................ ATTTCAGAAGGGCTAAATATTCGCCGCCGAGAC 9890 28 100.0 32 ............................ TTCGAGCGGCTTGCCCGTTTGCGCGTTCATGC 9950 28 100.0 32 ............................ GATCGCCTTTAGCTGCTGACCCGTGAAAATAG 10010 28 100.0 32 ............................ GTTGATGGGCCTTGGTAAAAATCTACCGCCCA 10070 28 100.0 32 ............................ AATGAGAGATTGACTACAAACTTACCTCTAGC 10130 28 100.0 32 ............................ ATCAGTTGAACGATAGTGCGGATAAGAAATAG 10190 28 100.0 32 ............................ TATACGCGCGGCCAAAATCCTTGATGACTTGA 10250 28 100.0 32 ............................ GTAAAGGTTAGTCTCAAAGAGGCAATTGCAAA 10310 28 100.0 32 ............................ ATTAAAGGGTGGATTGAAAATCTATGAATATG 10370 28 100.0 32 ............................ TTTGCGGCCTGACAGGGGGTGCAATACTGACA 10430 28 100.0 32 ............................ ACTCTACGGCGCTTTCGCGTTCTTTGAATGAC 10490 28 100.0 32 ............................ TCAGTGCATTGTGTTCTGCGGCTTCCCCTTTC 10550 28 100.0 32 ............................ ATGAAGGCTTTCGGTGATGATAGCGTTTGGCC 10610 28 100.0 32 ............................ TCAATTACGAGTCTGCTCGCAGATACATTAAA 10670 28 100.0 32 ............................ CACGCTTCCGGCGGGATTGGCTGACTGCACTG 10730 28 100.0 32 ............................ TTACACGCAATTGCCACGCTGCCTGCTTTATC 10790 28 100.0 32 ............................ ATCGCAAGGGATTGCATTTGATGAAACAAGAT 10850 28 96.4 32 ...........T................ GCTAAAGGCTTAAGCGCCAATCATGACACAAT 10910 28 96.4 32 ...........T................ GATAACAACACATCGAGTTTTTCTAACTGTTG 10970 28 96.4 32 ...........T................ GCGCCCACTTTTTGCTGTGATAGCGCCGATTC 11030 28 96.4 32 ...........T................ CTTATAAAGGTCACGTATCAAGGTCATTAGCT 11090 28 96.4 32 ...........T................ AAAGCAATCAGTATTCCAACCAATGACAGTTG 11150 28 96.4 32 ...........T................ ACCGTCGGAAAATAACACAGAGTCATACATTG 11210 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 11270 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 11330 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 31 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //