Array 1 6-707 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH470346.1 Actinomyces graevenitzii C83 supercont1.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 6 29 96.6 31 ............................C CGACGTGCAGGGCCTCTGGCGTGATGGCAAA 66 29 86.2 32 AG...T......................C ATGAGCCGCTCAGGTTGGGTGCTACCTGGGTC 127 29 100.0 32 ............................. AAAACGTTGAGCTAAACAAACGCATCCTTGAC 188 29 100.0 32 ............................. TAGTTTATGCCGCCATATGCCCAGCCGTTGTC 249 29 100.0 34 ............................. GGCAGGTCATGCCACGACATGGAGACGGGGGTCC 312 29 100.0 32 ............................. TTCATGGATAGCACTAGCACTTGTAACCCTAC 373 29 100.0 32 ............................. CCCAGTCATAAGCTGAAAACTGCTCCAATGTA 434 29 100.0 32 ............................. CTAGGTCTGGTGATTGATGGCAAGGACTTCTG 495 29 96.6 32 ............................T AGGCGGCCGCGTCTACAACCAAAGCAGACAAA 556 29 100.0 33 ............................. CATCCGCGAAGTCGCTCAAATCATGGGTGTAAA 618 29 96.6 32 ............................C CGGCGGGTAAGGATTCGTGGGTTATGCTGGGG 679 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================== ================== 12 29 97.7 32 GTTTTCCCCGCTCACGCGGGGATGAGCCG # Left flank : AGCACG # Right flank : GCCGCTTTGAATGCTAACCCGATCGGGCTTATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.42 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 642652-642088 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH470338.1 Actinomyces graevenitzii C83 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 642651 38 89.5 38 GCC.................C................. GCAGTAGCTATAAAAGCTATGGGTAACAAGCCACTACA 642575 38 100.0 39 ...................................... CAGATTTACAGGCTTTACCCCCTGAACGAATGTGGGTTT 642498 38 100.0 38 ...................................... GGAAGCTATCCACCAACGCGAAGCAGATGGCGAAACCT 642422 38 94.7 35 ................G...C................. CTGGGTAGACATGCGTGTAGTGCTGGCCTGGATGA 642349 38 100.0 38 ...................................... AGACTCCCTCCTCGGGGAAGTGGTCAGGTTCGCCATCA 642273 38 89.5 36 A..........G..G.....C................. AGACCGGCAAAGACGCTAAAAAACGCTGGAACCAGC 642199 38 97.4 36 ....................C................. AGGTACCTTATATTTTTGTTACGGCCAATCGAAGTT 642125 38 94.7 0 ..............G.....C................. | ========== ====== ====== ====== ====================================== ======================================= ================== 8 38 95.7 37 TGTCTTAATGCACCTTTTGGTGCTCGGTGCTTTCTGAC # Left flank : TCGCCGCGTCCAGCAAGACACGACTGGTCACCGTGGACGCAAGGGCGATCCCCTATATCAGATCCGGCTTCTTTTGCGCGCCTCACACATGCAGGCTCACCTCACGTCAAAAGGAACGCCTCCGTGAGGCCTTCGTGGCAGATGAGGCGCATATCAGTGTCGATGTCGCCTACCTTCACTGGGCAAGTGCGCGAGGTCTTCCACCAAGCCGCACCCGCCCAAGGCCAACGCCTGGTCGCTTGTCTCATCCAGCGCCTACCAGCTTGTCCCATCCCCGAAATCGCTCGCCTAGGGGCGGACCCTACGCAAGTGGAAGGACGCCTTCTTGGCCTACTTGGATACCGGCGGAGCCAGCAACGGCTCCACGGAAGCCATCAACGGACATTATCGAGCTGGGCAGACGAATCGCCAGAGGTTACCGCAACCCCACCAGCTACCAACTCCGAATGCTCCTCATCGCAGGAGGTCTAGATGCCTCCACCCACACCCAACTCTGAAGA # Right flank : TGTACGGCGTGTCACGCCCCCTGTGACCAGGGGAAACGTCACCTCGGATCGCCAGGGGCTGGAAAAGCACCAATCCAATCCGCAAGCACGGCGTCAGATTATCAGACTTTTCGTTGCGATACGGTGTATCGCCACCGGCGGCCTCCGAGGCGGTTTTCCCGCCGGATACTCCTGTCGACGTCGGCGTGTCGGGAGGCAGGCCACCTGAATAGTTGTAGCGTAACTGTAAGGTTGCTTGCGGGAAGGAACGATGATGACGACACGTGCCACGACCTCGTTCATGGCGGACGCATACTCCCCAGACGCGCTCGTGCGCGCGCGGCGCCGCCTCCTCACCTGCGCCCCCGACAGCGGACACCAAAGCCTCGGCGAAGCGCAGCTGCGAGAACTCGCCGAGCAGAACTGGACCCCACCGGCCATTGCCCGCCTCGACGCCACAACCATTAAAGCAGCCGACCCCGTCACCCGGGCGCTCCTGGCTGAATCGGTGCGCGAAAGCC # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCTTAATGCACCTTTTGGTGCTCGGTGCTTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 644056-644754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH470338.1 Actinomyces graevenitzii C83 supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 644056 35 100.0 40 ................................... ATGAAAGACCAAAACTTTCAGAAATTCTCTGGCAGATCGC 644131 35 100.0 38 ................................... TATACGGGGCGGCCAGTGAGAGGATTTACCAGGATGGC 644204 35 97.1 41 .......A........................... AGTCGTACCGAGAAGAACAGCAAGATCGTCATTTGGCTTGC 644280 35 100.0 36 ................................... ACAAACGTGAACGCCATCACGTAATCGATGACAAGC 644351 35 97.1 40 .......A........................... GTAAGTTCACCGATTTTTTGGGAGGCTTCGCTCAGGTCGT 644426 35 94.3 35 ..........T....A................... GCGTGCTGTTCCCGTAGCGTTTTTGCCATTTTCGT 644496 35 94.3 40 ...............A........C.......... TCGTTGTATCATTCCGTAGATAATCGAAGGAATTGAGAGT 644571 35 94.3 39 ...............A.....C............. ACTTTAATTGACCTATCAGCCATACGTCCTATACCCCGT 644645 35 97.1 40 ........................C.......... ACTCATGGCATGGCCTTAACACTGGCGTTTACAGGGTGGT 644720 35 94.3 0 .................................GG | ========== ====== ====== ====== =================================== ========================================= ================== 10 35 96.8 39 CAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGAC # Left flank : GCCAGGAGCGCCCGAGTGATGGGGGCAGCCGTCGTGAGAGTGTTCCTGTCAAGTGCGGCGATGCGTGGCGGCGCCCAGTCGTGGGCTGCGAGGACACGGAGTTGTTCGTCGGTGAGGCTTCCCGGCGTGGAGGTGTTCGCTCTGGTGGGGTCGGGGTGTGCTGTGAGGAGTCGGCGTCTGGCGCAAGTGAGGGCTTCGGGGGTGAGCGCTTCTCTCAGGGACGAGGCCGTGGTGGGTGTCGTCATCGTCGTTCCTTCCACTCAACAACCTTGCGGTTACCCTACAAGTGTGAAGTGCTGTGACTGATCGACACGCCGGTGACGGCGGCGATCTCCGAGGCAAAAGCATCACCAGAGCGAGTCTGCGGCGATGCCAGCATTTCCAACGAATAGTCTGATATTCTTCCCTTGTGCTTGCTGGTCGGAGGGATGCTTTTTCGACCACTGGCGATCCGACGTAACGTTTCCCCTGGCCACAGGGGGTACGACACGCCGGGCAGT # Right flank : GCTCTTCAGAGTTGGGTGTGGGTGGAGGCATCTAGACCTCCTGCGATGAGGAGCATTCAGAGTTGGTAGCTGGTGGGATTGCGGTAGCCTCTGGCGATTCGTCTGCCCAGCTCGATAATGTCCGTTGATGGCTTCCGTGGAGCCGTTGCTTGCTCCGTCGGTATCGGAGTAGGCGTCGAGTGCGTCCTTCCACTTACGTAGGGTCCGGCCCAGGCAAGCGATTTCAGGAATGGGACAGGCTGGTAGGCGCTGGATGAGACGAGCGGCCAGGCGTCGGCCTTGGGCGGGTGCGGCTTGGTGGAAGACCTCGCGCACTTGCCCGGTGAAGATAGGCGACGTCGACACTGATATGTGCCTCATCTGCCACGAAGGCCTCACGGAGGTGTTCCTTTTGGCGTGGGGTGAGCCTGTGGCGCGAGGCGCGCAAAAGATTGCGGACCTGGGTAGAGGGGATCGCCCTTGCGCCCACGGTGACCGGTCGTGTCTTGCTGGACGCGGGC # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGAAAGCACCGAGCGCCAAAAGGTGCATTAAGAC # Alternate repeat : CAGAAAGAACCGAGCGCCAAAAGGTGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1279289-1276642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH470338.1 Actinomyces graevenitzii C83 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1279288 29 100.0 32 ............................. CGCGGTTTTCCTCGTCTACAAGCTGCGTAATG 1279227 29 96.6 32 ............................C CGCTAATAAGGTTTGAGCCGGCGTTATATAGA 1279166 29 96.6 32 ............................C CAATGTTGCGCTCACAGACAGTTACGAGAGCA 1279105 29 96.6 32 ............................T CTGTGGCTCCCGGTGTAGCGCGTGGCCTGTGC 1279044 29 100.0 31 ............................. ACCAATATCTCGCATATATTAGTTACATTTG 1278984 29 96.6 32 ............................C CTATCCCCGGATGACATCCTCATATATCCTGG 1278923 29 100.0 32 ............................. AGCGGCGCTCGCAGGGATACCTATGGGGGTCG 1278862 29 100.0 32 ............................. CGCACTCACCGCGCCCAAATAGCTATGACCCC 1278801 29 96.6 32 ............................T AGTAATAGCGTTGATACCTGCAGGGCGCCCTA 1278740 29 100.0 32 ............................. AATCAGTGTCTAGAGACTGGATTGCTTCGCCG 1278679 29 96.6 32 ............................A CCCGATCACTTCCTTAGGTAATAACGCTAGGG 1278618 29 96.6 31 ............................A GTTCCTTGCACGCACACCAAGCCGCCCTGCA 1278558 29 96.6 32 ............................T AGTGCCGGCGTTATCCCCGTAGCTATGCCAAG 1278497 29 96.6 31 ............................T AGAAAATGGCTACTGCCGCTAAGAAACCGTC 1278437 29 96.6 32 ............................T GCCCTGCCCTGTGTCCGCTATCTCAAGGGACG 1278376 29 96.6 32 ............................C ACGGACGCATCACCCCACCCCAAAACCAGCGC 1278315 29 96.6 32 ............................T TCGACACCCTCGCAGACCTGCAGGCCGCCACC 1278254 29 96.6 32 ............................C TGGGTGGTGGACACGCTTGTCCCTGGTGTGGA 1278193 29 96.6 32 ............................T ATCCTTATCGCTTGAGGATGCCTTTAGCTCCC 1278132 29 96.6 32 ............................T TGTTTTACCGTTACCGGATTTTCAGGGATCAG 1278071 29 100.0 32 ............................. GATGCGGGTCACCCTCAGTGGTCGGACGGACA 1278010 29 96.6 32 ............................T ATTGGTGCCAACACCGTTAGGGCCGTTGCCAC 1277949 29 96.6 32 ............................T ACCTAGTCAACCTCGTAGAAAAGGAACAAGAA 1277888 29 100.0 32 ............................. GTGTGGGCCTGCCACAGTGTTTTAGCACTGGA 1277827 29 96.6 32 ............................T GTGGTTCCATTCATAGGCGAAATTTCGCGCTA 1277766 29 100.0 32 ............................. ACCCCATGGCAACGGCCTTGTGTCTAAATGCG 1277705 29 96.6 32 ............................C GTCGCTACCGTACAAAAATGTGTGGGTGGCTT 1277644 29 96.6 32 ............................T CAGTCACTAAATCAGCGGCTGCTAGAGGTGGA 1277583 29 96.6 32 ............................A CGGGCGCTGATGCGTTACGGAACGGGCTGGAA 1277522 29 100.0 32 ............................. TCTGTGATCCCCAAGTTCATTGACAACGGCTG 1277461 29 100.0 32 ............................. TCTGTGATCCCCAAGTTCATTGACAACGGCTG 1277400 29 100.0 32 ............................. TCGCTGATTTTAAGGTGAAGCCTCTGGGTCAG 1277339 29 100.0 32 ............................. GTCGACTCCCTGACTGGGACGGTTGAAGCCGT 1277278 29 100.0 32 ............................. CTCATGGTGAGGCACCGGCTGCAGGCGGATCA 1277217 29 96.6 32 ............................C AACGGCGCAGCGCGGCGCTGCGTCTACGGGCT 1277156 29 100.0 32 ............................. GGGTGTATGGGAAACTTCTTGAAACTATCGAG 1277095 29 96.6 32 ............................C TGCCGCTTGCTGCTGCTAGCTGGTGGAAACAA 1277034 29 96.6 32 ............................C GCCGAAGCGTACTAACCGACTGGCGCGCTTTA 1276973 29 100.0 32 ............................. TCGGCCTCCAGCACCTCCCAATGCTCAGACAG 1276912 29 96.6 33 ............................A GAAGCTATAAACGCTAGTGACGCTACCAACAAG 1276850 29 96.6 32 ............................T TCGGCAAATACGACTTCTTCCTAGTCGTAACC 1276789 29 96.6 31 ............................C CAGCAGAGTGTCCTGGGGACATCGTTGTCAA 1276729 29 100.0 31 ............................. ATGTTCAAGAGGGTGGACTTGGGGTAGGTGG 1276669 28 86.2 0 AG......-...................C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 97.6 32 GTTTTCCCCGCTCACGCGGGGATGAGCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATGAGCCGGACTTCTTCCCCACCTCACTCGTAAGGAGATACCC # Right flank : GTATTTTGTTTGGGGGGCCGTTCCCTTGCCTCGTTTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGCGNNGCGGGGACCGTTTTCCCCGCTCACGCGGGGATGAGCCGGCACGGTAGTCTACCCACACGTCATAGAGACTGTTTTCCCCGCTCACGCGGGGATGAGCCTTGATGCGCGGCCGCCGTTTCCTCCAGGGTAGCGTTTTCCCCGCTCATGCGGGGATGAGCCGGCCATCGTAGTGC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1281171-1280655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH470338.1 Actinomyces graevenitzii C83 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1281170 29 100.0 32 ............................. GCCGCTAAGCCCGCTGAGGCCAAGCCGGAGCC 1281109 29 100.0 32 ............................. CAGCCCTAGCCAAATGGGACACGGAGTTTGGT 1281048 29 100.0 32 ............................. GCGCGCCTCTACCTGCGCACCCCCAAGCAGGT 1280987 29 96.6 32 ............................T TAGGCTGCAATGGGATTGGCATGTGTTGGATC 1280926 29 96.6 32 ............................T CGTGCCCCGACCCTCTAAAACATGCACCACCA 1280865 29 100.0 32 ............................. CAGGTCATGCCACGACATGGAGACGGGGGTCC 1280804 29 100.0 32 ............................. TTCATGGATAGCACTAGCACTTGTAACCCTAC 1280743 29 100.0 32 ............................. CCCAGTCATAAGCTGAAAACTGCTCCAATGTA 1280682 28 96.6 0 ....................-........ | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTTTTCCCCGCTCACGCGGGGATGAGCCG # Left flank : GATGTTGCCGACTTGCGGCTGTGGGATGACGCGGATGGGACGGTAGCTGCTGGTGTTTCCTATGATGAGGATGTGCCCTGGTGATTGTGCTGGTTTTATCTGCTGTCCCTGAGGGTTTGCGTGGTCATGTGACGCGTTGGCTTATGGAGATTTCGCCTGGTGTTTTTGTGGGTACTTTAAGTGCTCGTGTGCGTGAGCGTCTATGGGATATAGTCGTTGCGAACCTAAAAACTGGGCGAGCAGTGATGGTGTATCGAGCCCGTAATGAGCAGGGTTTGGCCTTTCTGACCTGGGGTGATCCTTGGCAGCCGGTCGACTTTGAGGGGCTCACTTTGATGATGCGCCCTTACTACTCTGAGGGGCGCGGCCAGTATTCTGAGCCTGATCCCGCGAGTCGGTTGCGTAGGCGACCGGCAGTGAGTAAATTTCAGCGTAGGCGCAGCTCTCAAGGCTTTCCAAAATCTGACCGATTTGGGGCGTAAAGCCCCAGTTCGAGAAGT # Right flank : CTAGGTCTGGTGATTGATGGCAAGGACTTCTGGTTTTCCCCGNTCACGCGGGGATGAGCCTAGGCGGCCGCGTCTACAACCAAAGCAGACAAAGTTTCCCCGNTCACGCGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCTCACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //