Array 1 259-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEMI01000102.1 Lacticaseibacillus paracasei strain L32 NODE_102_length_259_cov_0.257576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 258 36 100.0 30 .................................... ACCAGAGATAGACAGCCTCAGCCATTTCTG 192 36 100.0 30 .................................... CTCACCGAACGACCACAAGCCATACAGCGT 126 36 100.0 30 .................................... ACCAGAGATAGACAGCCTCAGCCATTTCTG 60 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : | # Right flank : CCTCACCGAACGACCACAAGCCATA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 417-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEMI01000063.1 Lacticaseibacillus paracasei strain L32 NODE_63_length_2888_cov_3.577327, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 416 36 100.0 30 .................................... CGTATGTCGCAATCCATGCGCAGATATAAC 350 36 100.0 30 .................................... GTTTGATCGTGCCGATAGTCGTGCGCTTAA 284 36 100.0 30 .................................... CTTCAAACTTTCACGATTAGCCACGGGTTC 218 36 100.0 30 .................................... CAACGGTGCTGCCAACTGGATGCTCGCGAG 152 36 100.0 30 .................................... CGGAACCGGTTATTGTCATACTCGACAACA 86 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTCGGTGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCTAGAGATTTCTTTGCGGTGACTGAACAGATCGGTGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACGG # Right flank : CACGTGATCGGTGTCATAAGTACATAAATAAGTCTCAGATAGAAGTCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 22669-20719 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEMI01000030.1 Lacticaseibacillus paracasei strain L32 NODE_30_length_22722_cov_4.040230, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22668 36 100.0 30 .................................... AACTTGAAGAATTAATCCAAGCCAAGCGCA 22602 36 100.0 30 .................................... AGGCTATCGAATTTAAAACTCGTGACCCCA 22536 36 100.0 30 .................................... CACGTTTCGAGCCTTGGTATCAACCAAGAA 22470 36 100.0 30 .................................... AATCCGCCACAGCAAAACAATGATCCGTTT 22404 36 100.0 30 .................................... TGGACAATGAGGCAACTCAAGAGTTGGTTT 22338 36 100.0 30 .................................... AATTCTCAACTGACTGTGATCGGCTGATTC 22272 36 100.0 30 .................................... TCGTCAGCCATTCATCTCACCTCAGTTCGC 22206 36 100.0 30 .................................... TGCCAAGTTTTACAGTGAGAATCCACATGT 22140 36 100.0 30 .................................... AGCACTTTGTTCGGGCAAAGGTTGAGAAGC 22074 36 100.0 30 .................................... GGTCTTAAGACATTAGTGACTCATTACACT 22008 36 100.0 30 .................................... GCGAAAGTGAGCTTGCTACAGCTTTAATTA 21942 36 100.0 30 .................................... CTCACCGAACGACCACAAGCCATACAGCGT 21876 36 100.0 30 .................................... ACCAGAGATAGACAGCCTCAGCCATTTCTG 21810 36 100.0 30 .................................... AGATAGGTGTAGCCAGCCTGTAACACATAT 21744 36 100.0 30 .................................... TCTCTGTGGTTCATTGTATTGGTAGTTCTG 21678 36 100.0 30 .................................... TATACAACACATGCCGCTTCGTGAGATCAC 21612 36 100.0 30 .................................... AATGGCATTACTTCATTCTTCTCATCAGCC 21546 36 100.0 30 .................................... TAGGGCACCAGTTTCTGCCATCTCATTGAC 21480 36 100.0 30 .................................... CGTTCAAACGGATACGGTTACTTGGCTGCT 21414 36 100.0 30 .................................... GGTTTCTCGGCGACGACTTCATCGTGAATG 21348 36 100.0 30 .................................... GAGAACGGTGTAAGAATAACATTCGATGTT 21282 36 100.0 30 .................................... GTCGGCCCTAAATAGAGAACTGACTCGGCG 21216 36 100.0 30 .................................... CAACGGTGCTGCCAACTGGGTGCTCGCGCG 21150 36 100.0 30 .................................... GCTCCACACAAGTAGTCCTCGCTGACATTG 21084 36 97.2 30 ....................T............... CTTGTGCTGGATGGTCAATTTTATGGCATG 21018 36 100.0 30 .................................... GCGTTAACGCTCTGAAGTTCTAACGTGCTT 20952 36 97.2 30 ................A................... CAATCATTCAGCCAGTATGCACCACTGATT 20886 36 100.0 30 .................................... AACGGCACCAGAGAAATAGTCATCGGTGGG 20820 36 100.0 30 .................................... AAAATGATGACGACAGTTTGACTTATTGGC 20754 36 88.9 0 .............................G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.4 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : TTTGGAATCAATCAGTTCAAGAGCTTTATAATCTGTAAGATATTCAGTTTATG # Right flank : AAGCAGCAGTGATACTAAATTGAAGCTAAACTTGTCAAAAAGTGCCTCATCTTTTTGACAAAATAAGGTGTTTTACTATTTATTGTGTGAATCAAGCCCCGATATTTACAAAGCCGAATCTTTCAGCGGCCAACCTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATACATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGTATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //