Array 1 25140-27091 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV788983.1 Arthrobacter sp. HMSC06H05 Scaffold203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================= ================== 25140 29 100.0 32 ............................. AAGGCGGCGGAGGCTGAGATCAAACGCATCGA 25201 29 100.0 32 ............................. GTGATGAGTGTGAGCCGACTATCCGACCACCT 25262 29 89.7 75 ..........................NNN NNNNNNNNNNNNNNNNNTTCCCCGCGCCTGCGGGGATGATCCGTGTTTCCGCGTCCGTGCGCCGTATGGTGACAC 25366 29 100.0 32 ............................. GACGTGGATGAGATCGAGACGCGCTTGAATGA 25427 29 100.0 32 ............................. GAACAGCTCTCGACGGTCTACTCGGCGGCTTC 25488 29 100.0 32 ............................. GCCTTCCTTCAGGCTTTCACTGCCCTCGACCG 25549 29 100.0 33 ............................. ATGATCTTGGAGCAGCGAGATGCTGAGAAGCAG 25611 29 93.1 17 ...........................NN NNNNNNNNNNNNNNNNN Deletion [25657] 25657 29 96.6 32 N............................ TAACTGACCAAACGGCCCGGGGCGAACTGCCC 25718 29 100.0 32 ............................. CGCCCACAATATGGTTCCACGCCTTCCGGCCG 25779 29 100.0 32 ............................. TACGAGGTGATCGGCGGTTCCTTTGAGGCCAT 25840 29 93.1 77 ...........................NN NNNNNNNNNNNNNNNNNNGTTCCCCGCGCCTGCGGGGATGATCCGCGGGGCAGGATGTATTGCTTCAAATAGGTGTT 25946 29 100.0 32 ............................. GACATCGCCTGGCATGCCGGTAATTACGGCAT 26007 29 100.0 32 ............................. AAGCACGCGAGAAGGCTGAGCAGGCTGAGAAG 26068 29 100.0 32 ............................. GATCTCGGTATTGCGTTGCCTCCACAGTTGAA 26129 29 100.0 32 ............................. TCGATACCGGCGTGCGGGTACCGGCCCCTGGA 26190 29 96.6 34 ............................C GCTACCACCTACTGAGGCCGCTGGCGATCAGATG 26253 29 93.1 77 ...........................NN NNNNNNNNNNNNNNNNNNGTTCCCCGCGCCTGCGGGGATGATCCGGCTCCAAGGTGCGCCGCCTCATCACCGCCAAT 26359 29 100.0 32 ............................. TGCTAGACACGGAATTCCAGACACCCGAGGCG 26420 29 100.0 32 ............................. ATACCCCAGCCCCGTCACCGCCTTCACTCATG 26481 29 93.1 76 ...........................NN NNNNNNNNNNNNNNNNNNTTCCCCGCGCCTGCGGGGATGATCCGTCTTGGTAGGCGGTGGCGTAGGGGAGGGCGGC 26586 29 96.6 32 ............................A AAGTTCCATCATTTCCGTAGACCCGTGCGCCT 26647 29 100.0 32 ............................. CTGTTTCAACTCAGGCGCTTTACCTTCGTCAT 26708 29 100.0 32 ............................. ATAGACCCGAATTTCTCGGCACCCGCTTTGAG 26769 29 100.0 32 ............................. CATTGAACTCGAGCATATCCTCGGTCTCAACC 26830 29 96.6 21 A............................ GCNNNNNNNNNNNNNNNNNNN Deletion [26880] 26880 29 96.6 32 N............................ GCATGGGCGCCCGCCATATGCGGGACGGTCAC 26941 29 100.0 32 ............................. TCATTGGGTGTCTACGAGAGTGATGATTGTGA 27002 29 96.6 32 ............T................ AGCACGCCTGTAATTCGCGTATTTACAGGGAT 27063 29 93.1 0 ..........................TT. | ========== ====== ====== ====== ============================= ============================================================================= ================== 30 29 97.8 37 GAGTTCCCCGCGCCTGCGGGGATGATCCG # Left flank : CCACGGAAGTAACGCTGAAGCTTTGGGGTGGTTTCGGGCCAGAGGCTTCGGCGAAGAGAAATTACGGAGGCACATAGCAGTTGCTAGTCCTAGTTTTATCGGCAGTGCCTGCAGGGTTGCGGGGGCATGTGACTCGGTGGTTGTTAGAGATTTCTCCTGGCGTTTTCGTTGGGAGCGTTTCCCGGAGGGTGCGTGAGGCTCTTTGGGAAGAGATCCGGGGTTCGGTCCGCACTGGCCGGGCGATCCTGGTTTGGCAATCGAATAGTGAACAGGGTCTTGAGTTTTTGATTCACGGGCATCATTGGGAGCCTGTGGACTTTGATGGGATAACGCTCATGATGCGCCCGCATCAGCCTTCCTCGAGCTCAGCCAAGGTTGGTTCCAGCAACGCGTCGAAGTGGCGCCGTTACGGACGCAGATCAAACTAATGATTCCCGGTTGTTGTCTAAAGTGAATCTTTTGACCACAATAAGGTACATTGACCCCAATGGGATCCAAGT # Right flank : GACCGTCGACGATGCCGCGGTAGTATCCGAGATGAGTTCCCCGCGCCTGCGGGGATGATNNNNNNNNNNNNNNNNNNNNGTTCCCCGCGCCTGCGGGGATGATCCGTTTCCTGGCGTTCGCGGCCTTCACCGGACGGGAAATCAACGGATTCAAGGGACTAGTCATCTCGCTGATCGTCTGCGTCCTGGCGATTAGCGCGGGAACGATCATCAACGTCTTCGTCTAAGCACCGGTGAACCGTCTGAGAGAAAGAGAAGATCCTCATGGCTGAAACTGATCCATTAGGCAGAAGCTGGAAACTCTGGGGCGGTATCCTCGCCTTCATCGTGGTCATTGTGATCGCGGGGCTAGTCATCTTCCCCCGCGTCAACTCTGAACCAGAAACAGCTCCGACCGCTGCTGCCCCGTCGGTACCAGTTGAGTCTGCGTCCCCGCCCTCCCCTTCGAATTCGCCTTCGGCTTCGGCTTCCAAGCCAGCTTCTGGGGATTGCCCTGCGCT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCTGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 193486-194562 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV788983.1 Arthrobacter sp. HMSC06H05 Scaffold203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193486 29 96.6 32 N............................ TTGGCTGAGGATTACGCGCCCCGCACCGTGAA 193547 29 100.0 32 ............................. TTTTCGAGTTCGCGGGCTGGGATACGCCACTG 193608 29 100.0 32 ............................. ACCGCCCCAGAGACGTTGCTCGCGGACATGAC 193669 29 100.0 32 ............................. CCGCCCTCTACAGCGCAGACTACACACAGGAC 193730 29 89.7 13 ..........................NNN NNNNNNNNNNNNN Deletion [193772] 193772 29 86.2 32 NNNN......................... AGCTGGCTGAGTCTCTACACGTGCATCCAGAT 193833 29 100.0 33 ............................. TGTTAGATCCTCACGGTTGAGTTCGTTCAGGTA 193895 29 100.0 32 ............................. AATCCCCCATCCCAATAGACGACCCCGACCAA 193956 29 96.6 17 ............................N NNNNNNNNNNNNNNNNN Deletion [194002] 194002 29 93.1 32 NN........................... AATTGACCGATCGTCCGCTGGCTGGCGGCGAG 194063 29 100.0 32 ............................. CGGCGGGCGAATACAACGACATTCCCAGACAC 194124 29 100.0 32 ............................. GAGAAGTTCAATGCTCGTTCAGATCGCTGTTT 194185 29 93.1 16 ...........................NN NNNNNNNNNNNNNNNN Deletion [194230] 194230 29 93.1 32 NN........................... TCTCTGCGCTAATGCTGGATCTCGCACGCAGG 194291 29 100.0 32 ............................. AAGCTGACGATGAAAACCGCGGAATCATGCGG 194352 29 100.0 32 ............................. ACGGAGCTCATAGGCCGTCTGTTCGGTGGAGT 194413 29 100.0 32 ............................. GCTGACGAGTACGCGGCCTGGCTATTGATTCC 194474 29 100.0 32 ............................. ATCAAGCGCGCGGGAAAGAGCCAGCTGACCTT 194535 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.1 29 GAGTTCCCCGCGCCTGCGGGGATGATCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : | # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCTGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //