Array 1 2792993-2791744 **** Predicted by CRISPRDetect 2.4 *** >NC_015761.1 Salmonella bongori NCTC 12419, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2792992 29 100.0 32 ............................. AGACATCAGACCACCGCGAGCCAGGAACACGG 2792931 29 96.6 32 ............................C GGGTATACGTTACACCGGGCAAATGTGGTACA 2792870 29 100.0 32 ............................. GGGGGATGGAGGTGCTAGACCCACAGTTTTAG 2792809 29 100.0 32 ............................. TTGGGCGACTCCAACGTTATAAAAATCAAAAA 2792748 29 100.0 32 ............................. AATAATAGATTTATTAAGTGCGGGAGAAATTA 2792687 29 100.0 32 ............................. TAATTCCTGTTTCCGTCATTAGCTGGCATAGA 2792626 29 100.0 32 ............................. CATATAGTCATCTTACGCTAACAACTTGTTAA 2792565 29 100.0 32 ............................. GATATATTCAGCGATATACTAACGGAATTAAT 2792504 29 100.0 32 ............................. CGTTTCTCAATGGTGGGATGGCGCAAATGAAC 2792443 29 100.0 32 ............................. CGGCAAACAAAATAGCGATTCACGGTAATACG 2792382 29 100.0 32 ............................. GGAGTTGCAGCTACAATTGTTGGTAGCAAGGA 2792321 29 100.0 32 ............................. GACATAACCGGGTTTTGCCGACACAAGGGGTT 2792260 29 100.0 32 ............................. TTACGCTGTGTAAAATACGGGGTGCATTCTAG 2792199 29 96.6 32 ............G................ TACAGGTTGCCATCGGCCCCCATTCCAGCCAA 2792138 29 100.0 32 ............................. GAATCCAGTTGCCGTTTAAATCAATTCGCGCC 2792077 29 100.0 32 ............................. CACTACCCGTCTGAGGCCTGGACGATTATCCA 2792016 29 100.0 32 ............................. AATTCAATACGGAGGGGTGTCAATGGATATCA 2791955 29 100.0 32 ............................. CGTATGGAGAGATTGGCAAAGATTTAGGGTAG 2791894 29 96.6 32 ................A............ GTCAGAATGACGAATTTCCCTGAATTATCAGA 2791833 29 100.0 32 ............................. CAATGACCTCCCACCATAGTACCAATACCAGC 2791772 29 79.3 0 .....................C.TTTA.T | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATACTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGTTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACATTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTTTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2810040-2808974 **** Predicted by CRISPRDetect 2.4 *** >NC_015761.1 Salmonella bongori NCTC 12419, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2810039 29 100.0 32 ............................. CGGCAACCGACCCATCTGGAGGTACTGAAAAT 2809978 29 100.0 32 ............................. GGCGGATACCGCTAATAAAATGCTAAAACAGC 2809917 29 100.0 32 ............................. GCCATTAACCGTGCGTTGCGTCAGGTTGATCC 2809856 29 100.0 32 ............................. TCTAATCAGTATAATGAAGAGACTTTAATTAA 2809795 29 100.0 32 ............................. ACAATTCAGGACGTGCTGATTTCTGGGCTGGT 2809734 29 100.0 32 ............................. TTATTCCTGAAAATCCTAATCTTCTATTTGTA 2809673 29 100.0 32 ............................. AGTCATAAAATTCGGCGCATACGATAACTTTT 2809612 29 100.0 32 ............................. AGCGAGTTCATTATAAATATCATGGTTGCCGC 2809551 29 100.0 32 ............................. TACCCACGCGCAGCACGCCAATTTACGTAGTT 2809490 29 100.0 32 ............................. GTTCGCCCTCGGCCAGCGTGTAAAACTTGATT 2809429 29 100.0 32 ............................. CCAATAATTAAACGTTGCATTTGTTGCTTCGG 2809368 29 100.0 32 ............................. TTTTTTTTGTTTTATCAGGGCTACGCTATAAA 2809307 29 100.0 32 ............................. GAATATCACATGAAATGTCAGGAACGCCTTTT 2809246 29 100.0 32 ............................. ATGTACGCCAAATTTTCGCAAGTCATCGATCA 2809185 29 100.0 32 ............................. GAAACAGTTACGCATCCGCTGTTTCCTGCTGG 2809124 29 100.0 32 ............................. CTTCCGGATCATCCTTTGGTAACGGCTCTGAC 2809063 29 100.0 32 ............................. GCAGATGAAAAATACTGCGGTTGGGTGCCCTC 2809002 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCTATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTACCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGACATGGATCACACTATTCTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : TTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACTTCGATATTATTCGATACCGGACCTGACGACAGTTTTCTACAAAATGCGTCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACACGCGCGACCCCATGCCAATTAGCGACAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //