Array 1 3078391-3076851 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074094.1 Salmonella enterica subsp. enterica serovar Typhimurium strain A_cip chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3078390 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3078329 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3078268 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3078207 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3078146 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3078084 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3078023 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3077962 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3077901 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3077840 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3077779 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3077718 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3077657 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3077596 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3077535 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3077474 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3077413 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3077351 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3077248 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3077187 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3077126 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3077065 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3077004 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3076943 29 100.0 34 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAAT 3076880 29 100.0 0 ............................. | A [3076853] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3096508-3094523 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074094.1 Salmonella enterica subsp. enterica serovar Typhimurium strain A_cip chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 3096507 29 96.6 32 ..A.......................... TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3096446 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3096385 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3096324 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3096263 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3096202 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3096141 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3096080 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3096019 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3095958 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3095897 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3095836 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3095775 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3095714 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3095653 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3095592 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3095531 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3095470 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3095409 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3095348 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3095287 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3095226 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3095165 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3095104 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3095042 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3094981 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3094920 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3094859 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3094798 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3094737 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3094676 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3094615 29 100.0 36 ............................. CGTTCATCGGCAGCGTCACGCAATATGAGTGTAGAT 3094550 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ==================================== ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //