Array 1 345420-347304 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATUO010000003.1 Listeria monocytogenes strain SCPM-O-B-8687 3length=352480, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 345420 36 100.0 30 .................................... GCAACCATGGCGGAAGTAACAACTGTCATA 345486 36 100.0 30 .................................... GACTAGCAATATCTGAAACCGCTTCTCTAT 345552 36 100.0 30 .................................... TAATGATTTTAAGTATATTTGCTACATTGA 345618 36 100.0 30 .................................... TATATGATAAAGTATAAATATAAACAAAGG 345684 36 100.0 30 .................................... CATCTATTTGTTTTACTAAATCGTCGTATC 345750 36 100.0 30 .................................... ATAAAGATTGACTGGAAAGGTCCTAAAGAC 345816 36 100.0 30 .................................... AGACCGTCAAGCGTGGTGCGTACAAAATGT 345882 36 100.0 30 .................................... AAAGAAGCGGCTGTTTGATTTATATATCAG 345948 36 100.0 30 .................................... AACCGGAATGATTGGCGTTGAACCAGAAGG 346014 36 100.0 30 .................................... ATGAATTAATTGACGCACAGAACAGTTACG 346080 36 100.0 30 .................................... GGTTTCCTGCAAAGTTAACATCCGTTAAAT 346146 36 100.0 30 .................................... AACCTTACGAAAGATAACCGCATTAGCTTG 346212 36 100.0 30 .................................... CGTTTTTCCAAAGTCTGAATGCTCTTTCAT 346278 36 100.0 30 .................................... TAAAATCCGAAACTAGTGGGCTTGCTGTGT 346344 36 100.0 30 .................................... TTGCATAAAAAAAGCCCTAACGTTGAGGTT 346410 36 100.0 30 .................................... AAAGTAAATCGTCTTCCTCCCACTCAAACT 346476 36 100.0 30 .................................... AATAAAATAAATGATGTTGTTAGATTGATT 346542 36 100.0 30 .................................... TCATTTTCTCCTGGAACGTTTCTGTTACCA 346608 36 100.0 30 .................................... ACGATACGCAAGAAATTAAGTGATTTATAC 346674 36 100.0 30 .................................... TTAATCCTAACGCTTCGGAAAATCGACACC 346740 36 100.0 30 .................................... TCTGCCATTCATCACTAAATTCACATAAAT 346806 36 100.0 30 .................................... GTGGTGACTGTCTAGTCCGTTCAGCAAAGG 346872 36 100.0 30 .................................... TTACATTATGGCTAACTCCTACGCCTTTGA 346938 36 100.0 30 .................................... TGATAACATTACGCAAGAAAGATAAAAACA 347004 36 100.0 30 .................................... ATCGAAATCACCTACACCAAGAAAAAAAGC 347070 36 100.0 30 .................................... TCCGACAAGGAAGACCCGTTCCCGACTTTG 347136 36 100.0 30 .................................... AATGGACGGTGCTGTTGTTGTCACTGAAAA 347202 36 100.0 28 .................................... TAATATTCTCCCCCCATCGCTAACAGGG 347266 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [347291,347297,347300] ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 170915-171396 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATUO010000004.1 Listeria monocytogenes strain SCPM-O-B-8687 4length=352065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 170915 29 96.6 35 ................T............ TTGTCATCTGTGGTGTCTTCAACCACTTCTTCTAT 170979 29 96.6 35 ................T............ TCTGTAAAATCAAAAGTATCATAGAAACGATCTTC 171043 29 100.0 35 ............................. TTCGCCATGACGAAATCTAGCGCTTGTCCTACTAA 171107 29 100.0 36 ............................. GGCACAGTCTTCACGATTTCGGGGATGGGGAAAACT 171172 29 100.0 35 ............................. TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC 171236 29 93.1 37 T...............A............ TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 171302 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [171325] 171368 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 92.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGAGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATTAGCGAGATAGAAATTT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTTTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //