Array 1 10505-10757 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEWM01000022.1 Psychrobacter sp. I-STPA6b Contigs1_11_len:86528, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10505 28 100.0 32 ............................ ATTTCAGGGGGGTTATGCTGTATGTAGCGTTT 10565 28 100.0 32 ............................ AACATCTCCAAGACGGCTAAAGAATGGTTTAA 10625 28 100.0 32 ............................ TCAATCGTATCTTCATCACGCAACTCGCCTAA 10685 28 100.0 15 ............................ TACTGTATATAAGTT 10728 28 75.0 0 T.....T..A.T....T....C...G.. | T,T [10731,10747] ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.0 28 GTTATCCATCGCATAGATGGTTTAGAAA # Left flank : AGGCAGTCAAAGCTTGCTTTAGTGGATTGCATGGGCGTGATGCACAGTGGCAACAGCAAATGCGTGCTAATATTCTAGCGGTTACTTTAGCCGATTTACAACGAGTGGCAACGACCTATCTGCTAGATAAAGCACATAGTAAGGCAGTGCTTGCACCCTATGATAAAGAAAGCACCATGAGTGAGCTTGGCTTTGTGGTACATAAAGTTAAAAGTTAGTATCTAGTATTCACTGATATATTTTTCATAGTAAAAATGAAGGCAATGAGTTTTTAATTTGTTGCCTTTATTTTTATTAGCATTCAATTTCACCAAACACCATTCCTTATCAACTTATTTTGATGTCAACTGCTTTAGAGCTCTTAATAAAATACCCTTTTTTTATGCTTATAAAAATAATCAATACAATCAATGACTTGAAATTTAAGGTTAATTAAAGGGTGAAATAAGGGTTTTGCCCCGAATGTCTTGTTATGATTAACTTCTTGGTAGTATACTTCT # Right flank : AGATATATTTTTAACACCTTATAAATTATATTGTTGAAATTGGCACAAAATACATATTATCATTAATAAATATTGTTATCCAGATAGTGAAAAACTTATAAAAAATTAGAAGAGACTTAAATGTATAAGATATATTTATTTTCTAATCAAAATAGGATGGTATTTTCATCAGTGAATATTTCTTATCCATATAAAGGTAAACTGACGATATTATTGCTAAACAAAAAATTACAACAGGAATCCCTACCTGATTTTAATAGGATTGAAGTTTTTGTAAAAAATAATCTAGAAGTCACATCTAAAATAATATCTGCTAATATAAACAAAGTTTCTATCAAAAACTTCTATGTTTATATTGATTTTATAGAAAGTATGGATACAGACTACATATTTGGAAATAATATTTTTGAAAATATAAATATGATTTTGATGCGCAAATATAGATTATGGCTTGGTGGTAATGAAGATAAAAAATTTCATTGGTTAAGAAGTTGCTATTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 64089-65617 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEWM01000022.1 Psychrobacter sp. I-STPA6b Contigs1_11_len:86528, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 64089 28 100.0 32 ............................ CAAATCAGCAAGCTGTAGATAATGCGAATAAT 64149 28 100.0 32 ............................ TAGTAAAGGTGAATTTGACGGCAGAGCATATG 64209 28 100.0 32 ............................ TTGTAAAACAAATCAAAGCAAGAGCAATGGAG 64269 28 100.0 32 ............................ CGAAAATTATGTTAATGATGAAGTTATTGTTA 64329 28 100.0 32 ............................ AGTTAAAGCATTTTGTATGGACGACAGAACAC 64389 28 100.0 32 ............................ TTGCTATCAACAGTTAATAACCCTGTTGCCAT 64449 28 100.0 32 ............................ ATTCTGCGTAGGTGCTGTTTTTACTGGTTGAG 64509 28 100.0 32 ............................ TTTGATTAGATGTTGTTAGTGTTTTTGCTGGG 64569 28 100.0 32 ............................ TCCGCCCCATACTGCTAAGGCTTGCCACCCGA 64629 28 100.0 32 ............................ AATTATCTAAGGCACTATCTATAGCAACTGTC 64689 28 100.0 32 ............................ GTAATGTTAAAGAGCATTACAACACCCTTTAT 64749 28 100.0 32 ............................ TTTGCGGGAACAATATGTGCAAGTTGTTAAAG 64809 28 96.4 32 ..........A................. ATCTTGCAAGGCTGACTTAAATGGAGCAGTAT 64869 28 96.4 32 ..........A................. ACCAAATGGCTATGGCTGTCATTGCAGTGTTA 64929 28 96.4 32 ..........A................. TAGAAAGTGGTAAAGGTCGCAAGCAGGGTGTA 64989 28 96.4 32 ..........A................. GTCTGTTGTATTCAACACGCTCCAGCATGCGC 65049 28 96.4 33 ..........A................. ATGTTCTATAGCGTAAATCTTTCCGTCTTTGAT 65110 28 96.4 32 ..........A................. TTTTCAACAAAAACACCTCCGATACTTTCCAT 65170 28 96.4 32 ..........A................. TGACTTTATTGAAGGATTAGATGAATTTATAT 65230 28 100.0 32 ............................ GATTTGTATTGTGTATAATCTGTCATGATATA 65290 28 100.0 32 ............................ ACAGAAACAGGGAGGAACTAAGTGATAATTTC 65350 28 100.0 32 ............................ AGAGATTATGTGCAATATAAATTAAGCAAATA 65410 28 100.0 32 ............................ CCCTGACTATAAAACCCCAGTTTCAAAGTATG 65470 28 96.4 32 ..........A................. ACAAAAAACAAGAGTGGGTGTGCGGTAAATAT 65530 28 100.0 32 ............................ TGTATCGTGGGCTTACGGCTTTGCTCAGTGTA 65590 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.8 32 GTTATCCATCGCATAGATGGTTTAGAAA # Left flank : CACCTCATTGGTGGAGCAAAACTGGCTGCCGAACTGGACGCCAAACGAGCCATTCGTGATGGGGCAGAAGTGGCGGCGACGATTTAATATATTAGGAGATTTTTGTAGCCATTCCTGCCGTCCGCTATTATCTGCCAGACTAGGCAAGGCGGTGACACAGTTTGGGGCGTTCCATCTAAACGAGCGACCACCCCAAAACCTAGCCACCGCAACTTGCCTAGCCCGACAGGATAACCGCTACCGTCAGGGCTAGCGGTTACATCTGAGTACTTACAACCATTTATCGTGGTTTGTATTTCGCTTATGGTTTTCGTATCCAACCACATCTACTTTACCTACCTTACTCACTTAAGCGACCCTAGTAAAATACCCTTCTTTTTACGCCTATAAAAATAATAATTAAAATCAACAACTTAAAAATAAAGAAGAAATAGAAGGTAAATTAAGGGTTTTTACCCCGCACACCTTGTTATTAATGACTTTTTAACGCTATAATTCTT # Right flank : AGCCGTATTCTGCTCCGTGAATGCCAGTAAATAGTTATCCATCTAAACCCATAAGATGCTATGTCGGATTACTAACCAAGCAAAAAGCCAAATTTGACATAGCATTTTTAAAAACTTATACTTTGGCGAAATTTTGTACGGCCAAACCACTAATCAAACGATCAATAAAGTTATCAATCAAACCAATTAATTATGACACAAACTAATCACAGCACTTACTTACCATTAGCTTATCTGGGTTATTTATACCCAAGATATCGTGGTTCGTTTGTGCCTAAAAATTAGTAAAATTTGCCTTACTGATTAGAATAGCAAAAGCGAGCCATTGGGCTCGTTTTTTTGTGCCTGCTATTTTTAATTAGGGTCTGTTGAACATTCAACTTTCATGGGATATATGTACGTGAGGCGGGTAGTATTGATTAATATCCATAATAAATTAATTTAAATAAATTTAAAAAATTTGTTGACTTTTAAAATTCTATGTCTATAATGACAACCAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCCATCGCATAGATGGTTTAGAAA # Alternate repeat : GTTATCCATCACATAGATGGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 138000-138507 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEWM01000075.1 Psychrobacter sp. I-STPA6b Contigs1_6_len:260547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 138000 28 100.0 32 ............................ CAATGGCAAACCCGACGGAGTCAAAGTGATAC 138060 28 100.0 32 ............................ TGCAAGTCTTTATAGGTTTTCGTGGGTAAACG 138120 28 100.0 32 ............................ AGTTAAGTGTGTGATTAAGGCGCTAATACGCC 138180 28 100.0 32 ............................ TCTTGCCCCGCCCCTGCTGTCCCGTCCGATGA 138240 28 100.0 32 ............................ ACTAATAAACTGACAACGTTGCTGTATCAGAT 138300 28 100.0 32 ............................ TTGCTGACTGGTTGGCTGTGTTTGTAGTGATT 138360 28 100.0 32 ............................ TGTCAACTAATATCATATCCCCGTCAAATATT 138420 28 92.9 32 ........C.......G........... TGCCATGATTACCTCAATGGTGAGTAGTGTGG 138480 28 85.7 0 ........................TGGT | ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.6 32 GTTTGCCATCGCATAGATGGTTTAGAAA # Left flank : TCCAGTGCCATAAGGCAGGCAGTGGCTCGCCTGCTTTGGGGCTAGGTACACCCAAGGTCGCTGCCATACGTCGGACTAAGATTTCACAGATTAGGTCTTGTTTGCTTTCGGTATTGCCAACCCAGTCATTTAGGTTGACATCACTTTGAGTATCAGGGGTATTGGTGGTTTGATTATCAGTATTACTCATCACGGTTTCCTTGTGGTTGTTTGTGTTTGCTTAAGATGAATAAGGGTTAAATTAGAATAGACCCTAGTATGTCAAAAAAAATAGAGGTTCTAAATCACAGGTTTGTTAACATGGCGTTCGGATTTGATTAATGCCAATTTGTTGTCATTTAACATATGACATAATGAATCAATAAAAAATACTTCATTTTGTAATTCTAAAAAATGTCTTTTAAAAACATATAATTATATAAGGATAAAAAATATAAACATAAATCAGACTTTTTCCTGCCACACCATGTTATTACTGGGTTTTTAGTAGTATAATTTAA # Right flank : TTTTATAAAACATCATTGTCAGGTTTGGGCATACTCATATATACTTAACCACCATTAAAAGGAGGCTTATTACCATTCAACAGCCAAAAATCAGATTATATCTTATTCTACAATCACGGCTATTTAACATAGGTTTTCTATGCACTTTGACCTAACCGATTTACAGCTATTTTGTGCCATCGCCGATTCACCCAGTCTGACCCAAGCCGCCAAACATACTTTTATATCCCCTGCCGCCGCCAGTACTCGTATTAAAAAGCTCGAAACACAGTTAGATACCCGCCTATTTTATCGTCATAACAAAGGTATGGAGTTAACTGACGATGGGCTAAAGCTACTGAAACAAGCCCGCAGTATTTTGCGTCAAGTTGAGCAGGTCAAACACAGCTTTTCCCAGTACCGCTCTGATGCGACAGGGCATGTGCGTCTATATGCCAATACTACGGCTGTCACGGACTTTTTGCCTGAGATTTTGGCAGATTTTTTGATACAACGTCCTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTTGCCATCGCATAGATGGTTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 191785-195345 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEWM01000075.1 Psychrobacter sp. I-STPA6b Contigs1_6_len:260547, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 191785 28 100.0 32 ............................ GTTTAAATACGCCTCGATTAGCTGTTGTGGGT 191845 28 100.0 32 ............................ CACTATCCTTTTCAGGCATGCCAAACTTGTCA 191905 28 100.0 32 ............................ ATTATAATGATAGTAAAACAAACTATTACCCA 191965 28 100.0 32 ............................ TAAGCAATGGGTTGATGACTACGGAGCAGCAA 192025 28 100.0 32 ............................ TGTATTTGAAGCTGTCGGTAATGAATATAGAG 192085 28 100.0 32 ............................ TGTTAAATCATATATTTCTGCTTTTGTACCAC 192145 28 100.0 32 ............................ ATCGCCAAAACTCTTGCTTGCGGAGTCAAAAA 192205 28 100.0 32 ............................ GAAATACAAGCATTGATTGCACGATTAAAAAA 192265 28 100.0 32 ............................ AATGCAAGTTATTTTTGCTTAGATGATGCAAT 192325 28 100.0 32 ............................ AAACCAACTTTAATATCATATATGGGCTGAAT 192385 28 100.0 32 ............................ AAAAAATCATATCTTTTAAAATATTGGCTTCA 192445 28 100.0 32 ............................ TCTCGGCTCTTTCCTGCCGTCTTTGTTCCAGT 192505 28 100.0 32 ............................ CAACGGCAAAAAGCACTTTACACACATGCTGA 192565 28 100.0 32 ............................ TCACACACCCTCGCACCCGACACTATTGAGCT 192625 28 100.0 32 ............................ GTTTATTATTGTCTGATTTATTATTTCGTGGC 192685 28 100.0 32 ............................ TTTGAATATGCAAGCATTGATTATTTCTGCTT 192745 28 100.0 32 ............................ ACTTATGAGATATCACGGAGCAAAATGGAAGC 192805 28 100.0 32 ............................ TTTAGAACCTGACCATCCTGACTATTATCCGC 192865 28 100.0 32 ............................ TTTGTATGTTGCCGACTGCTTACCTGCAAATA 192925 28 100.0 32 ............................ TATAGTGGTATGGGGTAATGAATTTAATGAAA 192985 28 100.0 32 ............................ TCCTTATGCCACTGCATTTTTAAACAGATAGC 193045 28 100.0 32 ............................ GTGCCATTTATGACTATCATCACAGTGTCATT 193105 28 100.0 32 ............................ TCGATAAGCATAAGCAGGTGCGCTTGGGTGGC 193165 28 100.0 32 ............................ TTTTGCGTAGTTATCAATGTCTGTTAGATGGT 193225 28 100.0 33 ............................ CTTGATTTTCTCTAAGCTCTCACGCTCTTTTTT 193286 28 100.0 32 ............................ TGATTTTCAACGAGAAAATAATAAGTGGACAA 193346 28 100.0 33 ............................ TTCTGGTAGTTTTAATTCGTCAGTCATATCAAT 193407 28 100.0 32 ............................ TATCATGCGGGTCATCAAGCGGTATCTCGACA 193467 28 100.0 32 ............................ TGGACAAACATATTTAACTTCTACAAGAGAAC 193527 28 100.0 32 ............................ TAGAAAAAGTCGGGCTTTACGCTTCAATAACT 193587 28 100.0 32 ............................ ACTTGCTATCTCTTTAAATGAGCCAAAACTAC 193647 28 100.0 32 ............................ ACATGCAATATTCATCATTTAATGCTGACTCT 193707 28 100.0 32 ............................ TACATTGAGTCGTGAACAACAAGTCGAGCGAT 193767 28 100.0 32 ............................ CTAGCAAACTAAAAGGGAAACCAAGGCACGTA 193827 28 100.0 32 ............................ AAAAAGCGGTCAATGGTACTATCAGTTCCCAC 193887 28 100.0 32 ............................ GTAGTATTGATATGCGATGCTATCCCATCTGT 193947 28 100.0 32 ............................ TTGTACAATTGTGTTGGCAATGGCATCAACCG 194007 28 96.4 32 ........................A... AGTATCATTCCGTGAAGTTGATATTAAATTAC 194067 28 96.4 32 .............C.............. AATAACAGACTGGTCAGCACCAATTAAATCTG 194127 28 96.4 32 .............C.............. TGCAAAGTAGATGAAAACCTGCTTAACTCATT 194187 28 96.4 32 .............C.............. AGTGTGTCGTTATCGTATGTCGCATCGCTAAC 194247 28 96.4 32 .............C.............. AACAACCGCTAGGGCGTTAGCGTTCCATGCCC 194307 28 96.4 32 .............C.............. TCAGCACAGAGGAATGCGAATGCCCCGTGGGG 194367 28 96.4 32 .............C.............. TAAAGTGAAAAATATCAGTTGACACAAGGAAA 194427 28 96.4 32 .............C.............. CATACCCGAAAAGACATCTATCATTCAAGATA 194487 28 96.4 32 .............C.............. ACTATGTCGCCCACGGATATGTTGGAGACAAT 194547 28 96.4 32 .............C.............. CAAGCCATAGCGTTTCAGCTGGGTGGAGTCTT 194607 28 96.4 32 .............C.............. CTCATCGGATAGCATCGATCTAAATTGTTTAT 194667 28 96.4 32 .............C.............. TCAACGTCCTTCCCTTCCTCCCTCCTATCGCC 194727 28 96.4 32 .............C.............. TAGCGTAATAGCACTTCAACAAAGCCAGCAGA 194787 28 96.4 32 .............C.............. GCCTATGATGACCTTTTGCCCTGTTTCTAGCT 194847 28 96.4 22 .............C.............. TTATTCTTTTCAAGCCCTGCAC Deletion [194897] 194897 28 96.4 32 .............C.............. AATATCTGCAATGATTCCGTTAATCTCGCTAT 194957 28 96.4 33 .............C.............. AATTATGGCGATACTGGTTTGACCCAATTTTAA 195018 28 96.4 32 .............C.............. TCGTATATACAAGGTATATACCCATAAGTATA 195078 28 96.4 32 .............C.............. TGATTCATCCATTTTTGATAGCGTTGTAAGAC 195138 28 92.9 32 .............C.............T TTTGGCTATGCTGTCATCATTCCAAGCACGAC 195198 28 96.4 32 .............C.............. TGCCTGCTTGCTGACAAGCCACACAAAGATAG 195258 28 96.4 32 .............C.............. TTTGTTGTCAGTACGCACAAGACGGCTAACAA 195318 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================= ================== 60 28 98.6 32 CTTATTCATCACATAGATGATTTAGAAA # Left flank : GAAGTACCAAAAACGGCTGACCAGTATTTATTGGTCAGGCGTTATCGCTTTACACCACTGGACAAACGGGTGCAAAGCTTGGCAACACACCATAATGTCAGCTTTGATGACGCAATGGCACAATATACCAGTCGAGAAAAACGAGCAGTAGAAAAGCATTATCCTTACATTAGCCTAAAAAGTGAAAGTAATGATAAACGCCCCTACCCTTTGCGTATCTGGCAACAGTCTGCTGAAAAGCCACAGCAAGGTCAATTTAATGCTTATGGTATGAACAATATGACATCGACTGTCACAGTACCACATTGGCAAGACTGATGTATTTTCACATATAGGTAATGATGAATTACCCAAAATTTGGGCATAAAAACCCTTTTTTTGAGCTATTTAAAAACTTATATAAAAATCAATCAGTTATAGCATGGTAAAAAATGGAGGGTAAAATAAGGGTTTTTGCCTTCCAAGCCATGCTATAACTGACTTTTTTGTGTTACAATTCT # Right flank : ATATTCATTAAAACATTAGCTACTACTGACTAAGTCACCGTTTGTTAGAAGCAATATCTCAATTTTTCCTATCAACATAAATATTCAACAAACCAATATATAAACCTTAACAATTATTTACTTTTATAACCACACAATAAGCCAACTATCATGTATAATTCTATCCCCATCTCTTAGGGGCTTATAATCATTACCCACCTATTAATCTACTGACTTAAATATATAGTTAAGTCAGTTTTACATATTTAAGGTAGTTTTATGAAAAAGATTTTTGGTAACGCTTTATCTACTGCAATGATAGCAATATTGATAGCAGGCTGTTCAAACATCAATACAGCATCAAATAACCAAGTAAATGCTCAATCAGATAACCATGCAACAATAGCCACCGATGCACCCACACCTAAAACACAGTTCCGTTTTAGCGATGCTGAAAACTTCGATATTGCAAACCCAAATAGACTATCCCATCGTATATTTTATAACAAACCTTCTACAGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATTCATCACATAGATGATTTAGAAA # Alternate repeat : CTTATTCATCACACAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //