Array 1 44990-46603 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGE01000029.1 Salmonella enterica subsp. enterica serovar Muenster strain 2009K0797 NODE_29_length_46779_cov_3.65856, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44990 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 45051 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 45112 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 45173 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 45234 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 45295 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 45356 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 45417 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 45478 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 45539 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 45600 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 45661 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 45722 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 45783 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 45844 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 45905 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 45966 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 46027 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 46088 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 46149 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 46210 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 46271 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 46332 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 46393 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 46454 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 46515 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 46576 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16551-20181 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGE01000015.1 Salmonella enterica subsp. enterica serovar Muenster strain 2009K0797 NODE_15_length_123978_cov_3.72634, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16551 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 16612 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 16673 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 16734 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 16795 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 16856 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 16917 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 16978 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 17039 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 17100 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 17162 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 17223 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 17284 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 17345 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 17406 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 17467 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 17528 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 17589 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 17650 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 17711 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 17772 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 17833 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 17895 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 17956 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 18017 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 18078 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 18139 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 18200 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 18261 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 18322 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 18383 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 18444 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 18505 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 18567 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 18628 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 18689 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 18750 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 18811 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 18872 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 18933 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 18994 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 19055 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 19116 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 19177 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 19238 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 19299 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 19361 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 19422 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 19483 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 19544 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 19605 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 19666 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 19727 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 19788 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 19849 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 19910 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 19971 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 20032 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 20093 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 20154 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //