Array 1 78006-77677 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBVU010000007.1 Erwinia amylovora LA637 chromosome VII, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78005 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 77945 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 77885 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 77825 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 77765 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 77704 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 88902-87469 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBVU010000007.1 Erwinia amylovora LA637 chromosome VII, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88901 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 88840 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 88779 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 88718 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 88657 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 88596 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 88535 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 88474 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 88413 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 88352 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 88291 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 88230 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 88169 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 88108 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 88046 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 87985 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 87924 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 87863 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 87802 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 87741 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 87680 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 87619 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 87558 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 87497 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 101972-99809 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBVU010000007.1 Erwinia amylovora LA637 chromosome VII, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101971 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 101910 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 101849 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 101788 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 101727 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 101666 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 101605 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 101544 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 101483 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 101422 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 101361 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 101300 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 101239 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 101178 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 101117 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 101056 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 100995 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 100934 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 100873 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 100812 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 100751 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 100690 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 100629 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 100568 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 100507 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 100446 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 100385 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 100324 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 100263 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 100202 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 100141 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 100080 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 100019 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 99958 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 99897 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 99836 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //