Array 1 20801-21345 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHI01000125.1 Leptospira kirschneri strain 56168 Contig125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 20801 37 100.0 35 ..................................... GTACATCAAACTCGGGGTCTTCTGATTTTGGCATA 20873 37 100.0 35 ..................................... TTCGTTTATAGCCTCATGTGCCGTCGAAAGATTTG 20945 37 100.0 36 ..................................... ATTTCGGGGACAATCAAATGAAAAGCGGGAATAGAT 21018 37 100.0 36 ..................................... TCGACAAGTGGCCCATAGCAAAAACCAAACTTCTGG 21091 37 100.0 34 ..................................... CCGTTGACTCGAACGTTGTCTCGATTTTCAATTT 21162 37 97.3 36 ...................T................. GGGTTGGCTTTCAAACGATGAGAAAAAATCAATCAG 21235 37 100.0 34 ..................................... TTTGTAATTAGTGTTTAATTTTGATTCTTTATTT 21306 37 83.8 0 .........................T.TT....GG.T | CT,G [21330,21339] ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 97.6 35 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : CCATGGTTCTTATTCAGAACCATACAATCAATTTCCCAGTATTTTAGGGTTTTGCAGTAAAACTTACGGCTCTCCATTTTTTAGAACTAAAGCAGAATGCTCTTTATTGGATTGGGTTCTTTTATGTAGTCATAAAGTAAGAGAAAAATTCCATACTCTATAAAATGAGTTTTTGAGACCGAATTTTTACTAAACGTTTAAATCAATCTTCTGAAAATTCATTCCTAGATATCCATCTACTTAGACTTAAAACTAAAGAATTTATAGTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATGAAGCGCTTTTTGCGAACCTGTTTCTCCCGATCAATTGCGGCCCATTCGCACTCAAACGAATAACCACCGTTTAGCGATTGAACAGTTTTGCTTAACGTTTATACAGTATGGCGTCAGTAGGTTCGCGATAATTATGTCTAGAGAAACTAATAAATCTTTTCCTAATACATCAATTAGAGACTGTGCAGCCGCT # Right flank : TCGATTCCTAAGACATGCGTTTCTTCTTTTATTTAACATAAGTTCGATTTAGAACTTTCTGAATTTATCTATAAAAATCACAGATTGTATAAATTCCGATATTCAGCTTTTTATGATAAATTTCAGGTTTATAAAATGAATTGATTCAACCCAAGTTCTTTAAAACTACAGCAAATCTTTATTTAAGGAAAGGATACAAAAGACCGAAAACGGCAAAATCTCTAGACTTTCTTCTTCTTGGAAAACAATTGTTAATTAATATTTTAGAGAATTATAATATACTTGATTAGAATTTCTAGAAATTTTTATTTTACCGCTCTATACTCAAAACGTACCACAACTCAATTTTCTCCAGTTAACTTACAGGTGTCTCAAAACCAAATCGCACTTTATCAGAAAGATCAATCTGAATAACGAAAGTGCCTCACTTCTATTGACGCTCGACAGATTCTTATTATATTAAATCACGTTATCGCAAGGTTTTATTCTTTACCTTGAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 3472-3722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHI01000161.1 Leptospira kirschneri strain 56168 Contig161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 3472 36 100.0 35 .................................... CAGGACTATCCCATGCCTGGACTTGACTATGCACC 3543 36 100.0 35 .................................... TCGTTTTAACGGGGATTTGACAATGGGTTTTACGA 3614 36 100.0 37 .................................... CTTTTAGCGTAGAAGAAGAAATGTTTGCGAATACACA 3687 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 100.0 36 TTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTAGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATAGTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATCTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAAGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTGCGGCCGGTTCGCGTTTAAACCTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAAAGCTTTTTCTAATCCATAAATTTGCACCTTTTCGGCCGCT # Right flank : ATTTCGTCCGGGAATGCTTTTGTTAACAAGTTGAATTTCTTTCTCTTATTGAAGAGGAAGTGGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 1427-1100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHI01000263.1 Leptospira kirschneri strain 56168 Contig263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 1426 38 100.0 34 ...................................... CTTTTACGATTCTACATTCTCCATCTAAACTTCC 1354 38 100.0 33 ...................................... CCTCATTAATAGATTTTAACGTATCGTAATTTT 1283 38 100.0 34 ...................................... TGTTTTTAAAATATAAAAATGCTGCGAATGCCAC 1211 38 97.4 36 .....................................T TTATGAACTCAATCAAATCCGTGATTTTTCCGTAAA 1137 37 84.2 0 ..........................AA..AC-..G.. | A [1110] ========== ====== ====== ====== ====================================== ==================================== ================== 5 38 96.3 34 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAACC # Left flank : TATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGC # Right flank : AAAGCCAATCCAGATTGTATTCAATTCCGACAGAACCCAATTTATTTCAGTTTGAATTCTCTATGACAAAATAGCGCCCCCTTCTGAACTTGAAAAGAATGAGTTCAGCCGAGAAAAAATTCTCTAAAAGTATGATATCAGAATTTGTTCGTAAAACCGCGATTCGTGGTAGTTCCCACATTTTAGGAATCGATCTGTAAAGTTCAGATTTCAACTTTTTTCAGAAAAATGAATCATGTTCAAACTCACGTTAGTATAAAATCAATTTTAAGGTAGATCCCCACTTTGTAACATGAACAAAAAAGTGTACTCAGACACATGAAAATAATACGATTCTAATATTTCTTTCAAAACTTAAAATGTGGGAACTAACACAAAACAAGCATAAATTACGGAACAACACAAATTATAAGAGCTTTTACACTTTCGCAAATAATACACTGCTCATTTTTGATGCCATTTTCATAATAATTTAACATGGGTTTGGCGTAAAAGATTCA # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 2777-2954 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHI01000193.1 Leptospira kirschneri strain 56168 Contig193, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 2777 37 100.0 33 ..................................... TGCATTTTTCGGACGGACGGCACTCGATTGATC 2847 37 100.0 34 ..................................... AGAAATAAATAGAGTTGGGCGTTCCGTTGAGTCC 2918 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : AACAATCTTTTGCAAATTACGTCCCTTTTTGTATATTACGTGAGTTCGGCTGAGTAAATATTTTCATAAAAGTATGAGTTCCTACAATTTTAGGAATTGTTTGTAATATCTTGATTTGTGAGAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACACCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTATGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACCGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTCGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGCTATTAACCTTTTTCTTATACATCTTTGCGGGGCTTTTGAGCCGCT # Right flank : TCCGCAGGCAACCACTGAAAACCCATAACCAACCCACAAGTATTTAGATTTCAATATAGATCTGTCGGAATTACGACAAATCCTCTGTAAAACTGAGTTCCCACCCTTATTTTTGGGTGGGGGCGGAGGTGGAGAAATTCGGAAGACTTTTCTCTATCAGAAAAACAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 26252-27362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQHI01000006.1 Leptospira kirschneri strain 56168 Contig006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 26252 36 100.0 36 .................................... ACCCCAAGATACCACCTGTCAGACCGTGCCCGAATT 26324 36 100.0 35 .................................... AATTCATTTTTTTGGGTCGTTTTCGGTAGAATGCT 26395 36 100.0 35 .................................... TTGGAAACATTATTACCGTTAGGATTAAATTTAGT 26466 36 100.0 34 .................................... TACTATGACGAGTTCAAAAACTTAGAATATTCTG 26536 36 100.0 38 .................................... AACGAGACTAAACAAATTAAACTATCGACTTTATTTAA 26610 36 100.0 35 .................................... GACTTAAGTAGTTTGTAGAGTTCCGTTTCATTTGT 26681 36 100.0 36 .................................... TGAGGAATACCATTTTGCAACTGTAGGCAGAGGATG 26753 36 100.0 37 .................................... CAAAAAAAAACAATTAGCAATTTATTAAATTACATTG 26826 36 97.2 36 ...................................T TCCCAGGCCGATCCAAATTTTTGTGTTCTTGATCAG 26898 36 100.0 36 .................................... TCCGCCAACCTCACTAATTCCGTCAGCGGTAATCCT 26970 36 100.0 34 .................................... TTAATACTCGTTCTACCGATCAAAGCGATAACAC 27040 36 100.0 35 .................................... GCTGGTGCTGACGTAAAGTTAGCACAGAGTTTATT 27111 36 100.0 36 .................................... ATAAAGATGGATTCCTCGAAAAAAACACCCCAAGAA 27183 36 100.0 37 .................................... GGCTCCTATCCTCAACGCGAACGTTAGGCACGATAGT 27256 36 100.0 35 .................................... GGAAAAGGACAATTTGGATCATGGCCCAAGTCGAT 27327 36 91.7 0 ......................T.....C.A..... | ========== ====== ====== ====== ==================================== ====================================== ================== 16 36 99.3 36 CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : AATTGGCTAAAGTTATCGAAAAAGAAGACGACGTATTTTACCTGACTCTTTGCGCTAAATGTGCCTCCGGAGCTCACACCCAAGAGAAAAAATCGGCCTGGCCAGAGGCTCCCAAAACACTCAAAATTCTATAATTCAAGTATCTATTTATGGCATAGACATAATTCCCTTTTTTTAGCATCAGAATTAGCGTCTTAGTCCAAACATAACTTCGTATTCGTCCATCTTTATAGAGATTCAGAAATAACCGCATTCTAATAGCAGTTAGTTGAAGTTATTTTCTTTCTTGCGAAAATTCTGGTCCAATTTATTATCAAATACGGATCAAAACATACTTGAATTGCTATTTCCTAATCGTACAGGTGGATTGACTCAAAATATAATTTATTAAAGAAATTCGAAATGAAAAAAAGTTATAAAAAGCAATATTCTTGTTCACCCTCTATAATTTCCTTTGTATCGACAATCTCTACACCTAAAAGCTATAAGATTAAAATGCT # Right flank : CAAAAGGACAGAAAAATCGGCCGATGCGAAAGCGATCTCCTGCAATGCAACATGATTTCACTATAAATATTCGAATATACTGAATTTATAACATGTTGCGTTGCAGATTGAAACGGAGAGCGCGGTTTTTCTTCGCGGAGGCGAAGAAAAATTCGCCCCGCCTTTTATTTTCCGAATGACCGAAAGCTGAATAGAATTATACCGCAATTCGAATATTATAAAAATAGGAACTTCTTCTTGGAAAATCCTTCGTTTTATTTTTTGATCGAGAATGTTTTTCGACTTTGAATCAAATCGTACTTTTTAACGTTTCATGGTCGCAACCCAATGTGCAATGTTTTTGAATTCAGGATTTTCCTCGAGGGAGGAAAAATATTCTCTCGCCCATAAGAAATGAGCGCTTAAATACTCTTCCTCCTGGAGTTCCCGCAAATGTTGTAGTGCCAGTTCCGGTTGTTTGTTAATCGCAAAATATCCGGCAAGCACGAGTCTTAAACGGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //