Array 1 1344-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBQ01000304.1 Salmonella enterica subsp. enterica serovar Kentucky strain KS 6 NODE_304_length_1462_cov_2.80272, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1343 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 1282 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 1221 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 1160 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 1098 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1037 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 976 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 915 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 854 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 793 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 732 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 671 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 610 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 549 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 488 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 427 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 366 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 305 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 244 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 183 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 122 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 61 29 93.1 0 ..G.....A.................... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.2 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTCCGATCTATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAG # Right flank : GTTGCGCTGTTCTATTGGCGGCAATTAGATCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13249-11572 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBQ01000125.1 Salmonella enterica subsp. enterica serovar Kentucky strain KS 6 NODE_125_length_13248_cov_4.23489, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13248 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 13187 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 13126 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 13065 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 13004 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 12943 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 12882 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 12821 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 12760 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 12699 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 12638 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 12577 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 12516 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 12455 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 12394 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 12333 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 12272 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 12211 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 12150 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 12089 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 12028 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 11967 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 11906 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 11845 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 11784 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 11723 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 11662 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 11601 29 100.0 0 ............................. | A [11574] ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 54-813 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBQ01000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain KS 6 NODE_84_length_18692_cov_4.08025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54 29 100.0 32 ............................. AGTACGAGGCACTATTCGGCAAGAAACCGCAC 115 29 100.0 32 ............................. GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 176 29 96.6 32 ........................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 237 29 100.0 32 ............................. GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 298 29 100.0 32 ............................. GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 359 29 100.0 32 ............................. CGCCATAAACGCGACTCCGTCACACATCCGTA 420 29 100.0 32 ............................. ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 481 29 96.6 32 ...........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 542 29 100.0 32 ............................. GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 603 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 664 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 725 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 786 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGCCAGCGGGGATAAACCGTTGCGCTGTTCTATTGGCGGCAATTCTCTGAAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18446-18657 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBQ01000084.1 Salmonella enterica subsp. enterica serovar Kentucky strain KS 6 NODE_84_length_18692_cov_4.08025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18446 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 18507 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 18568 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 18629 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : ACGGTAGGAATATTCACGTTTTTTAAATCGGAGTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //