Array 1 1222-156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIB01000020.1 Photobacterium galatheae strain S2753 contig0022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1221 29 100.0 32 ............................. CCATCATCAAGTTGCAGTCCGAAACATAGTGG 1160 29 100.0 32 ............................. TAATAATACCCTCTCGGGCGCGCTGCGTCTAT 1099 29 100.0 32 ............................. TCGATTTTAGATAGGGTTTTCACTTTCCTGTC 1038 29 96.6 32 ..........................T.. TATACTGCTGACAGTGCTTCGGATTCTTCAAA 977 29 100.0 32 ............................. AATTCCACACTAACCCTCACGTAGGTGGAACA 916 29 100.0 32 ............................. GAGGAGATGAGGAACGATGCCATACCGTGTGG 855 29 100.0 32 ............................. GAAGTAATTACTGGAACAGAATGTGCAATTGG 794 29 100.0 32 ............................. AATCATCCAATGGTGTCGGTTTTGTTCAGAAT 733 29 100.0 32 ............................. ATATCCTCGGTGATCTTGACCTCATTGGTAAA 672 29 100.0 32 ............................. GTGTAAATAGATGGCTAACGAAATCACATCTG 611 29 100.0 32 ............................. CCTTCGCTGGCCTTGAGCAATGCCATTGCAGA 550 29 100.0 32 ............................. AGCGGGGCGGCATTGACCACGACAACGCCTTT 489 29 100.0 32 ............................. CCAAACACAACTGGATGTACTACGACCAGAAC 428 29 100.0 32 ............................. TAGAGTACCGCCTGATGCATACTGTGTTGACA 367 29 100.0 32 ............................. CATCGAAATCGCAAACAATGCAGAGCTTTCTC 306 29 100.0 32 ............................. AAAACGACCGGTTTCGAATTCCCGGACGCTAA 245 29 100.0 32 ............................. CTCGGTGTTTGATCACGCAGGTGAAATGTCAG 184 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGTAGGTACGGGGATGAACCG # Left flank : TCCGTTGATTGAGGAAGTGCTGAGCGCCGGGGAAATAGAACCACCGCTGCCGCCGGACGATGCACAGCCGCCAGCGATTCCTGAGCCGAAGTCGATTGGTGATGCCGGACACAGGAGTAAATAGCCATGAGTATGCTGGTGGTCGTGACGGAAGCGGTGCCGCCCAGATTGCGGGGACGACTGGCCGTCTGGTTGTTAGAAGTGCGTGCCGGTGTGTATGTGGGCGATGTGTCACGACGGGTGCGTGAAATGATTTGGGAACAGGTGACGGAGCTGGCTGAAGACGGCAATGTCGTGATGAGCTGGGCCACCAATACCGAATCAGGATTTGACTTTCAGACCTACGGCGAAAATCGCCGTGAACCCGTTGATATCGATGGCTTACGCCTCGTACTTTTCAAGCCGGTTGATGCACCAGATGCGTAGTTTTCGGGGGTGAAAAGTTTGGTAGAATTTTCGAGGTGTAAAAACACCTTTTAGAACAATGATCTACATTTAGA # Right flank : GTGGATTGAATCCTACTCTCAGCAATAAGGAATGTGTTCCCCGTACATACCTGTCTCTTGATCACACCTTGAAGGTCAAAAGACTTGGCGAAAGGGTAACCGCTTCTTCCTGTTATCCCGCTTCCTTCTGTTATCTCGCGAAGGCGGGGATCCAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAGGTACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAGGTACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11309-10365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIB01000020.1 Photobacterium galatheae strain S2753 contig0022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11308 29 96.6 32 ............................T GGTTGTTGTTAACATGCTCAGTTTTTGTTGCA 11247 29 100.0 32 ............................. AAACCGCCCAGCAGTGCGCCGACGGCAAGGCC 11186 29 100.0 32 ............................. ACCACAAAAGGGACGGGCCTCAAGACTCATTA 11125 29 100.0 32 ............................. CTATCTGAATATGCGCCAATCATGACGCACCT 11064 29 100.0 32 ............................. GCAATAATGCTACTCAAAACGGGCAATCAAGC 11003 29 100.0 32 ............................. GTGTCTTTTAATTGAACATTGACTAGTTTTAA 10942 29 100.0 32 ............................. GGGGCGACCTCCGATCCCGCGAACTTAAACAG 10881 29 100.0 32 ............................. GGCGCTCTATCTATGTGGTAAAGGCGGCGCAT 10820 29 100.0 32 ............................. CCCTTTAATTAGAGTTGATAGCCGCCAACCCA 10759 29 96.6 32 ............................A TAATGAGCATGTGTAGGTATTTTTACCAATAC 10698 29 100.0 32 ............................. GCAAACGAGTCTATGCGGGAATATGCCGATCT 10637 29 100.0 32 ............................. ATACGCCTCAAACAGGATTCTCGCCCCGAATA 10576 29 100.0 32 ............................. AGAACCCCGCCGATCAGTGGGACTGAATGGGC 10515 29 100.0 32 ............................. AGTTCAATAACCTCCATATGGCGATTGGTGAT 10454 29 100.0 32 ............................. ACAACCTGACGGACCCACCGAAGACATGATTG 10393 29 72.4 0 ...........AC.CG.T.T.......AC | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.9 32 GTGTTCCCCGTGAGTACGGGGATGAACCG # Left flank : GGTGTGGAAGTGATTGTACTGGGGGGACATTTACGTCGTAAATCCATGTCTTTTTATGGCAGTCAGGCTGAACACGCACTGGACAATTATCATTTCAACAAATTGTTTCTTGCGGTAGATGGATTTGACCTGAATAAAGGCATCACAACCCACAATGAAAATGAAGCCCGATTGAACCGCCGGATGTGTGAAGTGGCCGACGAAATTATTGTGGTGACGGATGCGAGTAAATTTGGCCGTATCAGCCTGCACAAAATTCTGGAGCCGGGTAAAGTGCATAAAGTGATTACGGACAAAGCCATTCCGGAACGTTATCTTGAAGGGCTGCGTAAAGCTGGAATTGACGTCATTCTGGTGGATGCCTGAGCGAATGCCGGGTTTTGAACCAGTCATTGAAGACTACCGACAGTGTTGTGTAAAAGGTAGTTTTCAATGCTGAAATTGTTGGTAGATTTGATCCGGTAAAATTTTCCGATATAAAACAGTGGTCTATATTTAGA # Right flank : CATCGGCTTCCTGCCTGCACGGAATGGTGTTTATAGATTGATATTCATGATTGAAAGCATTTCACACAACTCGGGCGTACCCACCTCAAAGCAACTGTCTCTCTGCAAAGGCAGGCACTAATCTTCGCAGAACTTGAAGTCGCTCGATTCGATTCCAACGACATTCCCGTTTGGGTCACAGTATTCATCTGATTTCATTTATATAGTGCGCTGTGGGTTGTTGAACCGGGAAGGCTAACCAGCAGGATGTGTTTGTTTCTAAATCAGGTTGCTGTACAACAACCGTTCAGGGATATGCCATGCTCAGCCAGAAGGGATACGGTGATGCCAACTTATTTTCAGTACTGGGGAAAAGCCAAACGCGATCCGAAACAGCCCGGTGCAGATTATCATTTACTGCCGTACCACTGTCTGGATGTTGCCGCGGTCGGTTACCTGTTGATGGATCCGGACAAGCCGCTCACACGAGATTTAGCCGATTTTCTGGAGATCACGCCTGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25800-26379 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIB01000032.1 Photobacterium galatheae strain S2753 contig0034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25800 29 100.0 32 ............................. GCAGTTGGCTCACTGATCAATAACGAGTCTGT 25861 29 100.0 32 ............................. TGCTCGATGGCGATTTGGATGACACAAACCAC 25922 29 100.0 33 ............................. AAAAAACCATCTACCGCACTAGTACCAACTAAC 25984 29 100.0 32 ............................. AGCGGGTTATGGTGACAGGAAATACGGATACA 26045 29 100.0 33 ............................. CGCGAAATAATGTTACAGTGATGCGCTCTATTC 26107 29 100.0 32 ............................. GTGAGATGATTTGCTATGTGTATGAGTAACAG 26168 29 100.0 32 ............................. GAGGTGCCCAAAACCACCCTCACGCAATCCGC 26229 29 100.0 32 ............................. CCGATGTCTCGTGTGATTTGGTAAACCGTCAC 26290 29 100.0 32 ............................. GAGTACAAAGAAGAGCTGGCCTTTCTTACTGC 26351 28 82.8 0 ............TCG.......-.....A | T [26377] ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.3 32 GTGTTCCCCGTAGGCACGGGGATGAACCG # Left flank : AACCGGTGCCTACGATAAAGACTGGGCCAGTGTCCATATGACGCCGGAAGAGTCGGCACAGGCGCATCTGGATTTACAGGGAAAAGTCATGATGCCAATTCATAACGGGACCTTCGATCTGGCGTTCCATGCCTGGTATGAACCGCTGGAACGGGTCTCTGAGGCAGCCAGGATTCGGGGGATTGCTCTGTCCACGCCCGTGTTCGGCCAGCCGGTGACGGCAAAGCAGATCCCTGAAACGGGTGCCTGGTGGCGTTAGGATCCGGTGTATCAGAAGGCGTCATCCGTCTATTTTTGTGAAATTGCTCCGAGTCTTGCGAGATTGATCCGAGCGGTTTTTCAGGCTTCAGGGCAGGGCCATGAGGGGCTTGGAAACAGGCGGTTTCGTGATGGACTGTCCGTATTCACAGAACCGCAAGAATGCGCGTTTTTCCCCAAAAAAATCTGGTAGAATTTTTGGTGTTGAAAAAATCCTTTCAGAACAGCAATATAAATTTAGA # Right flank : ATGACGGATAAAAACCCCGCAAAGATGATGAAATGTGCTTCGTATGTTTCTGTCAGGGCAGGAATTCCGATTTTCATCGGTCATAAAGACCCCTGGCGATGGCTGGAGAATTTATCATTCAGAGAAGCAAACGTTTTCTTCGTAAACTCAATAAATAAACGCTGGAAATTCGAGCTATATCACACTATTATGCGCTCCCGGCTTGCGTGTTGAATCTGTCACAGATTCGGCAATGCAGTTGCCAGCTATCAACAGCTATCTGTCTGCCAAAGGATGTCGGACCGGGCTTTGATGTGCTTCCTGGTGACTGAGGGCAGCGACGCATGACGGATATTCTCGCCTTCGGCAGCTTTGCGTGCGCCAAGTCACCGGCCATCGGACTTCGACATTGCAAGGTAGGTTTATGCAGTTCCTCTACAGCGCGGCAGGTATCGTCGCTATTTTTTTGTGCGCTTACGCACTCTCCACCAATCGTCAGGCCATTCGCTGGCGTACCGTTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAGGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 157735-158739 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIB01000004.1 Photobacterium galatheae strain S2753 contig0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 157735 29 100.0 32 ............................. CGCAGACGATTATTAGCGAACTGGCGCACCAT 157796 29 100.0 32 ............................. AGTTTTCATCAGAATCGTTTAAACTGGACTCA 157857 29 100.0 32 ............................. GTCGCCGGAATGCCGCTCACGAATGAATTGCT 157918 29 100.0 32 ............................. AACTAGGTTTTTTGTGCGCTTTGTCGCTTCCG 157979 29 100.0 32 ............................. TTAATGTGATTAAATGGCCACATCAGCCACAC 158040 29 100.0 32 ............................. TTGTCGTACCGCTATGTTCGGACTATGGTTGA 158101 29 100.0 32 ............................. TTGAAACGCTTGGAAAATGGGGACGAGAAGGC 158162 29 100.0 32 ............................. CGTAATTGGGTGTTGGGTATTCGTACCCAGTA 158223 29 100.0 32 ............................. GCGAGTTCATTTGTTATGTATATCCGGAATAA 158284 29 100.0 32 ............................. ATACTTTATTAGGTCAGGGTATTGAGTTTTTG 158345 29 100.0 32 ............................. AATGAATCAGGACGCGCAACATCATCACTAGT 158406 29 100.0 32 ............................. CGATCCCGATATAACGTTTATCGGTCGGTAAA 158467 29 100.0 32 ............................. GGGCAGCAGCTCAAACTTAAATCGCAGGGGAC 158528 29 100.0 32 ............................. TGTGGAATGCCTTGTATAGACACTTTTTTCAG 158589 29 100.0 32 ............................. CCTGAGGATTTTGACTCGTATAGAGAGGAGAC 158650 29 100.0 32 ............................. AACAGGGGCTTAGGGTATATTAGTAATTTCTC 158711 29 79.3 0 ............GA........A.CC..A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.8 32 GTGTTCCCCGTATCTACGGGGATGAACCG # Left flank : GGTTAAACCCAATATTGTGGCCAACGGGGCAATTAAATGGGCCAACGGTGTTCGTGAAGAAATGAATATTTCTAAGTCGGGCAGTACGTTAACTTTCCTGTCCCCACCAAGCATTATGGCACCCGGTGGTATCACGATTTTTTCCCGCATCGACAGTGCCCGTAACGGCAACTGCGAACATTACTACAACGAAAGTGCAATGAAAGTGCGGATGCAGATTTGTGACACCGGTGAAGTGACGCTGATCCAGGATGGTCAGGTGATTAACGTTGGTGCGCTGGCGCGGGAAGTTTATTGAAATTGCCTGAAGGGCGAGTGAATTCTGAAACCCTGATCCCTTGATGTCACTCATCGAGGGATTTTTGTATGTGCCAACCCATTTCATGACGGCCATCATCTCTGGTTTGACAGAGACGGAGGCAGGTGTTTTTTATGTGGAAAAGTCTGGTAGAATTTTCCTGCATGAAAAATATGTTATAGAACAAAGAGATAATTTTAGA # Right flank : ATGTTTTTCATCCCGGTGCTTACCGCTCCGGGATTTCAATCAGTACCAGCAGGGCACCAGCGCCGCCAAATTCCAGCGGTGCCTGATGAAACGCCATCACATCCGGGTGTTGGGCCAGCCAGAGTGGGGCTTTCTGCTTCAGAATATGTTTCCCGATGCCGTGCATCACGCAGGCACAGGACACGCCATCTTTGATACAGGCGGCAATCATTGCGGCCAGTTCTCGTTTTGCTTCCATTTGTGTCATACCGTGCATATCCAGAAAAATATCCGGGACATAGACACCGCGCCGTAACTTTTTCACTTCATACTTAGACACATCGGAACGGGCATACTGCATCGGGCCGTGTTCGCTGAGGTGCGGCTCGAACTCGTCCGAGAAGTAAAACTCGTGATTTTGGCTGTCTTTGATGCTCACATTGCGCTTATCGGTTTTCGGGCGCTGTCGGCGTGGGGTGATTATGGTATCATTCGACAGCTTTTTAATGCCCTGAACTGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATCTACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //