Array 1 2342827-2342308 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029342.1 Streptomyces sp. SM18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2342826 29 96.6 32 ............................T CGGGTCGACCACCCCACGATCGGCCCTGTCCA 2342765 29 100.0 32 ............................. GGTTCTGGACGGGGGACCTTGACGCCAGGCCA 2342704 29 100.0 32 ............................. ACACCAGCCCACGCCCGGGCGTAAGCGATCTG 2342643 29 100.0 32 ............................. TCGTCCTCCCACCGGGTGCGCGCCATGCCGCG 2342582 29 100.0 33 ............................. GCGAACGCCACGCAGCCCCCGGCGATGGGTACC 2342520 29 100.0 32 ............................. GTGCGGGTGGTCTCAGAATCCACCTACCGACG 2342459 29 100.0 32 ............................. CGGTTCGTTCGCATCAGGTGCGTTTGCGATTC 2342398 29 89.7 33 ...........T..T......G....... GAAGCCGAAGCGCTCCGGGCGCGGGGCTTCCTG 2342336 29 89.7 0 ...........T.........G...C... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.3 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GGGTGGACCACCAGCAGGTTGGGCCCGGAGCCGTCGTCCAGGGCTGTGACGGTCCGGCCGTCAGCGGATGATGCGTGAAGCTCAGTCATACGTACAAGGGTGTCGGAGCTGCCGACAACACGCCCGCAGGCGATTGAGCGTCACGCGCAACCTCGTTGTCCGCTTCGCTCCGCGCATGAGCGCTCGTCCGATGGTGTGCTTTCGCGAGATCTCGTACCTGTCCGGCGTGCGCCTGCACACCGCGTCCCGGGCGAAGATCCGTCACGGGGTACGTCTCCGGCCGCAACAGCCCGACATGGGTGCGCTGGGAAACGCAGCAGATTGCGGTGCCGAGACGGCTGATGCCTGACTGATAACTGGTCTCTGGCGGCGGGAGCTTGGCTAGGCTGGCTCTCCGAGGGTAGGGGGTCGTTACGTTGAGGCTTTTGTGCGTAATGCCGGAGTCGGCGAAAGCGCTTCAGAATGACCGGCCGCGCAGGTAGACCCGCTGGTCACGGAGT # Right flank : GACCGTTGAAAGTCGGCGTAGTTGAGCGTGTCCTGTTCCCCCGCGTGAGCGGGGATGAACGATGTCGCAGCGCACAGCGACCGGAGCGCCGTCCTCGCGGCCGAGCCGGAACCGGCCAGGAGGTGATCGAGAACGGCTCCTGGGCACCGGACACCGGTGTCACCGGACCAGACCACCCGGCACCGCGTCGGCCGGGGCGTCAGTGACGAGGTCTGTGTGGCGGGCCGCCCGATACCGCGATCCCCCGGGGTCTCGCGGCCCGCCATGGTCTCGCGGTGGACCGTCCGTTCCAAGGGGGCATCCGTCGCTGGGAGTAGGTCCCGTGCCTCAGGTGCCCTCCGCGCCCGCTGGTTAAGGTCGGTCCGTATGGAGACCTCAGGAACCGGTCGTCGCCCGACGGCGGAGCGTACGCGCGACGTGCTGGAACGGCTCGCCACCGAGCGGGACGTATGGGTGGCGACGGCTCACCCTGATCACGGGCCGCACCAGGTGCCGTTGTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2346955-2346495 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029342.1 Streptomyces sp. SM18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2346954 29 96.6 32 ........................T.... TGGTTGAGCTGCCCGTCCGACAGCTCGTCCCA 2346893 29 100.0 32 ............................. TTCACCCCTAGCACTTCATGGCATGCCGTACG 2346832 29 96.6 32 ..............C.............. CTGACGACGATGGGCAAGGCCCTGGGTAACGG 2346771 29 93.1 32 ..............C..........A... CAGAATGTGAAGACGCTGCCGTAGCCGGTGGC C [2346762] 2346709 29 93.1 32 ............T........G....... GCTATGTAGGGGACGCCTCGGCGGTATGTGGC 2346648 29 86.2 32 ...T...T.....G.......G....... AGCGGGATGACCAGGAAGAACAGGCCGGTGTG 2346587 29 100.0 32 ............................. GTGGCGGCGGCTCCGTCGAGCAGGAGCTCGCG T [2346575] 2346525 29 82.8 0 T..........AT.C...........G.. | G,G [2346499,2346512] ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.5 32 CTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : GCATGACGTACAAGTGCCGGCTGAGTGCCGTGGCGAACTGCCTGGCATCCCGGTGCAGTTGTGTGTAACAGCTCCGACGTACCTCACGGTTCTCGCGAGCTTCCTGGATGGCATGGGCCATCTCCAACTCGCGCTTCTTGGTGCGGTCGGCGCCCCGCTGGGTAAGCAACGCGCCCCCAAGCGTTCCCGCTACACCAGTGATCGCAATGAGTACCGCCCCCACGTCCATTCGATCAGCCTAGACCGCGTCACCTGGCTGGCCGGATATAGGGCGGCGATCACGACTCGCCGCCTGAATCGCTGCGAGTGCTGATCCGAACGAAAGGCTCTAATTCTGGCTATGGGGGTTCCTGCATGGCCGGTGGTCAACGGGGCAGCCCTTAGGCTGGCCCCCGAGGTAAGGAAGGTTCGTCGCGTTGAGTCTTTTGCGTGTAATGCCGGAGTCGGTGAAAGTGCTTCAGAATGACCGACTGCGCCGGTAAACCTGCTGGTCGCGGAGT # Right flank : GTGTCCAGTTGCGGCAGGTGTAGTCATTGGTGCGGGGGTGTCGGCCGCGGTGTCGGCGCGCCCGCCCGCCGCAACTCGTATCCGTATTGCGGCAATTCGAGAAGTTTGCCTACAACTGTGCTTATGAGCCGAAGAGTTGCAACATCTGAGCAGGGCGCTCAGTTCGAACTTCGTCGGGGTGGGGTCCACGTGACCGTCCAGCGCGTTCCCGCGTGGCTGATCACCTTGGTGACCACGGCCGGGAGTGCTGCGGTCGCCTGGTGGGTGGGTCGCTGACGGGCGACTCCGACCTCGGGTTCCCGGCCGGCCGGAATGCGCGGCCCGAGCCCGAACCCCCGCCCATGGGCACAGCGCATGCGTGCGGGAGCTTCCCGGGAGGTGTGCGCGGCGGGCGGTGTCAGCGGGCATGTCCGGCATTCACGCGCGGTCACGCCGGACGGCCAGGCTCCGTGGTCGCGTTCAGGCCGGTCAGGAGCAGGTCGAGGCCGGTGGTGAACTGG # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2349837-2349564 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029342.1 Streptomyces sp. SM18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2349836 30 96.7 31 .C............................ CGGGGGCGTCCTCATGGGCGCTGGCACCCTG 2349775 30 90.0 31 .C.T.........................A TCACGTACCACGTCGCCGACATGACCGGCCA 2349714 30 100.0 31 .............................. CCACACCCTGCTCCGGGTCGAGGCCGTTCAG 2349653 30 96.7 31 .............................G CCCCCGCCGATCTGCGCCCCGCGCGCAGGAC 2349592 29 90.0 0 .....................G...-..G. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.7 31 CTGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : AGCTACAGCGAGACCTTCCGCGGCTGCTCCCCGCGCACGCGGGGGTTGCCGTGCCCACACCGAGGAAGTTGGAGCATCCTGGAACCGTGGCCGAGTTCGCCTTGGCGCTTGACCACTTGCAAGGTTTTGCGCTCTCGCCCCAGGCGTCTGCCGACCTGATCCGCTCCGTCATCGAGGAGAAGTGCTGTGACTCTCGGCTTCCGTCCCGGGCTCGGCGCCGTCGCCTGGCGCAGGTCCAGCTACAGCAACACGCAGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTGCCCAGCGTGCTCCCGGTCCGAGACAGCAAGCGCCCCACGGACCGGTGCTCGTGTTCGGGGTGCCGGCCTGGTCTGCTTTCGTCAACGAGGTGAGGGCGGACCGTTCCGTGTAAGGAAGGCTCGCCAGGTTGGGTATTTTGCGTGCAATGTCGGAGTCGGTGAAAGTGCTTCAGAATGGCCGATCGCGCTGCTAAACCCCCTGGTCACGCAGT # Right flank : GCCAGCACCGAGAGGGATAAGTGAGGTCCGAGACAGCAAACGCCCGCAGGGACCGGTGCTCGTGTTCAGGGCGTCGGCCTGGTCCGCCTTCGTCAACGAGTTGAAGGCGAACCTTCCCGCGTAAGAAAAGAGGTGCCGGGCGTGAGAGCGTCCAGCATTCTGGGACGCATGCACGTCCAAGTGACAACGCCCCGTTACGAGATCCGCGCCCAGCACACCGCCTCGACGGTCACCGTGTATCAGGCGTACTCGCCCGCCATCGGGCTGCCCGCCGTACGGGACGGTCGATTCCCGGCAGCCTGGAAGCGTGACCGGATGACGTGGGTCAAACCCAGCTTCCTGTGGATGATGTACCGCTGCGGGTGGGGTACGAAGGAGGGGCAGGAGGTCGTGCTTGCCGTCGAGGTTGAGCGGGCGGGACTCGCCTGGGCGCTGGAGCGCGCGGAGCTGTCCCATTACGTGCGTGACGTCCACGCGGACGAGGCAACCTGGAAGCGGAG # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2350558-2350285 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029342.1 Streptomyces sp. SM18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2350557 30 96.7 31 .............................T GCATGGGCCTGTACACCCGGAACACCTTTAC 2350496 30 100.0 31 .............................. AGGCGAAGGCCGCCATCGCGGACGGTGACAT 2350435 30 90.0 31 .T.......................T...A CCTCCGGGTCCTCGACCTCGGCGGGGCAGCA 2350374 30 86.7 31 .T......T................T..T. GCACCTACAGCTACAGCGAGACCTTCCGCGG 2350313 29 80.0 0 .T...................G.T.-..GT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 90.7 31 CCGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : TGGCACCGGCTGGAGCGCGATAACTGTTCCCCGCGTACGCGGGGGTTGCCGTGCCCACACCGAGGAAGTTGGAGCATCCTGGAACCGTGGCCGAGTTCGCATTGGCGCTTGACCACCTGCAAGCTCTTGCGCTCTCGCCTCAGGCGTCTGTCGACTTGATCCGCTCCATCATCGAGGAGAAGTACTGTGACTCCCGACTTCCGTCCCGGGCTCGGCGCCGTCGCCTGGCGCAGGTCCAGCTACAGCAACGGGCAGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTCTCCGGTGTGCTCCCGGTCCGAGACAGCAAGCGCCCGCAGGGGCCGGCGCTCATGTTCGGGGTGTCGGCCTGGTCTGCCTTCGTCAACGAGGTGAAGGCGGACCGTTCCGCGTAAGGTAGCTAGCCAGGTTGGGTTTTTTGCGTGCAATGCCGGAGTCGGTGAAAGTGCTTCAGAATGACCGATCGCGCTGCTAAACCCCCTGGTCACGCAGT # Right flank : GCCCACACCGAGGAAGTTGGAGCATCCTGGAACCGTGGCCGAGTTCGCCTTGGCGCTTGACCACTTGCAAGGTTTTGCGCTCTCGCCCCAGGCGTCTGCCGACCTGATCCGCTCCGTCATCGAGGAGAAGTGCTGTGACTCTCGGCTTCCGTCCCGGGCTCGGCGCCGTCGCCTGGCGCAGGTCCAGCTACAGCAACACGCAGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTGCCCAGCGTGCTCCCGGTCCGAGACAGCAAGCGCCCCACGGACCGGTGCTCGTGTTCGGGGTGCCGGCCTGGTCTGCTTTCGTCAACGAGGTGAGGGCGGACCGTTCCGTGTAAGGAAGGCTCGCCAGGTTGGGTATTTTGCGTGCAATGTCGGAGTCGGTGAAAGTGCTTCAGAATGGCCGATCGCGCTGCTAAACCCCCTGGTCACGCAGTCCGCTCCCCGCGCACGCGGGGATGGACCCTCGGGGGCGTCCTCATGGGCGCT # Questionable array : NO Score: 3.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2353470-2353197 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029342.1 Streptomyces sp. SM18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2353469 29 100.0 32 ............................. AGCAGAAGCAGCGTCTGGACGAGTTCGGGGTC 2353408 29 96.6 32 .C........................... AGGCCGCTGGTCGTGTTCTTCCCGAGGGGGAT 2353347 29 100.0 32 ............................. CCGGTTCTGCTCGGGGGCGCCGCCCTCGTCCT 2353286 29 100.0 32 ............................. TGGCTGCGGACATCGCTCGCCCGCGCGACGAT 2353225 29 96.6 0 .....................G....... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GGCACCGGCTGGAGCGCGATGACTATTCCCCGCGTACGCGGGGGTTGCCGTGCTCGCACCGAGGAAGTTGGAGCATTCTGGAACCGTGGCCGAGTTTGCAATGGGGCTTGACCGCTTATAAGCCCTTGCGCGCTCGCATCAGGCGTTTGCAGGCTTGATCCGCTCCGTCATCGAGGAGAAGTACTGTGACTCCCGACTCCCGTCCCGGGTGCGGCGCCGTCGCCTGGCGCCGGTCCAGCTACAGCAACACACAGGGTGGCGATTGCGTCGAGGTTGCTGACGGATTCTCCGGTGTGCTCCTGATCCGCGACAGCAAGCGCCCGCAGGGGCCGGCGCTCGTTTTCGGGGTGCCGGCCTGGTCTGCCTTCGTCAACGAGGTGAAGGTGGACCGTTCCGCGTAGGGAAGGCTCGCCGGGTTGGGTATTTTGCGTGCGATGTCGGAGTCGGTGAAAGTGCTTCAGAATGACCGATCGCGTTGCTAAACCTGCTGGTCACGCAGT # Right flank : GACCACGCCCCTCAGTGGCGCGAACGGATCTACTGCTCTTATCCGGACAGTTTTGGGTTCTGTGGCGGTGGCTTCCTTCGATCGGGTGTCACCCTGCCGAGTGGGGGCGTCATCTCCTTGCCGTGCAGTGTCTGGCGCTCTCATCAGCGACAGAACAGAGCTGGCCGATGAACTCGCGGTAGCTGTCGGGGGCGTCGCGGTCCTTGATGGGCGGTCCATCGATCCACCGCTGCCAGAGACCGTCCGGGATGAGGAACTGGGCCGCCTGGCCGGCACCGAGCCGGGCGTCGAGCAACAGGAGCGCGCCGAGGGCTGCTGTCTGGTCGTAGTAGAGGTCGGGGCGGCGCAGGTAGCGGTCCAGGTAAGCGACCAAGAGGTCGGCGTCGGCAGAGGTCCCGAAGGTAGCGAGGGCAACGCAGTAGGCCTGCCCCGCGTACGGTCCTTCGCTGGCGAGCAGGAGTTCGCCGAGGCGTTCGCGGAACTCGGTCCTGCCGTTAACG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2354192-2353920 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029342.1 Streptomyces sp. SM18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2354191 29 100.0 32 ............................. ATGGGAACACCGTCGGGGAGGTCGACCATCAG 2354130 29 100.0 32 ............................. GCGCCGGTCTTCAGCGTCATCTGCGCGAAGTG 2354069 29 96.6 32 ...........A................. GCCTGCGTCCCATCACTCCGGACGGGGGTGCC 2354008 29 89.7 32 ............T.G.T............ CGGCTGATCGGGCACCGGCTGGAGCGCGATGA 2353947 28 75.9 0 ..AT........T........G.T.-..G | ========== ====== ====== ====== ============================= ================================ ================== 5 29 92.4 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCACGGTGTTGTCGTTCCTCGACCGTCCGGATGTCGCCTACCTGGAGAGTTCGTACTCTGGTGAACTGGTTGAGCATGCTCCGACAGTGGCTGAATACGCCTTAGCATTCGACTACTTGCAGGCTCTCGCGCTCCCGCCGGAGGAGTCGGCCGACCTGATCCGTTCCGCAGCAAAGGAAAGCTATCGTGACCGACCTCTCCCGAGCCGCTCTCAGCGCCGCCGCCTGGCGCAGGTCCAGTCGCAGCAATCAGGCGGGCGGCGACTGCGTCGAGGTCGCTGACGGATTCTCCGGTGTGCTCCCAGTCCGCGACAGCAAGCGCCCGCAGGGGCCGGCGCTCGTGTTCGGGGTGCTGGCCTGGTCCGCTTTCGTCAACGAGGTGAAGGCGGACCGTTCCGCGTAAGGGAGCTCGCCAGGTTGGATGTTTTGCGTGCAATGCCGGAGTCGGTGAAAGTGCTTCAGAACGACCGATCGCGTTGCTAAACCCGCTGGTCGCGCAGT # Right flank : TGCTCGCACCGAGGAAGTTGGAGCATTCTGGAACCGTGGCCGAGTTTGCAATGGGGCTTGACCGCTTATAAGCCCTTGCGCGCTCGCATCAGGCGTTTGCAGGCTTGATCCGCTCCGTCATCGAGGAGAAGTACTGTGACTCCCGACTCCCGTCCCGGGTGCGGCGCCGTCGCCTGGCGCCGGTCCAGCTACAGCAACACACAGGGTGGCGATTGCGTCGAGGTTGCTGACGGATTCTCCGGTGTGCTCCTGATCCGCGACAGCAAGCGCCCGCAGGGGCCGGCGCTCGTTTTCGGGGTGCCGGCCTGGTCTGCCTTCGTCAACGAGGTGAAGGTGGACCGTTCCGCGTAGGGAAGGCTCGCCGGGTTGGGTATTTTGCGTGCGATGTCGGAGTCGGTGAAAGTGCTTCAGAATGACCGATCGCGTTGCTAAACCTGCTGGTCACGCAGTCTGCTCCCCGCGCACGCGGGGATGGTCCCAGCAGAAGCAGCGTCTGGACG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //