Array 1 652709-653590 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCPO01000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain ARS-CC6329 NODE_1_length_894481_cov_73.1799_ID_16361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 652709 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 652770 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 652831 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 652892 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 652953 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 653014 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 653075 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 653136 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 653197 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 653258 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 653319 29 100.0 32 ............................. TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 653380 29 100.0 32 ............................. CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 653441 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 653502 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 653563 28 96.6 0 .......................-..... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 669751-670896 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCPO01000011.1 Salmonella enterica subsp. enterica serovar Kentucky strain ARS-CC6329 NODE_1_length_894481_cov_73.1799_ID_16361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 669751 29 100.0 32 ............................. CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 669812 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 669873 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 669934 29 100.0 32 ............................. ATTTTCCTCTTGATCCGACTGATAAAACAAAC 669995 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 670056 29 100.0 32 ............................. CCTGTAAAACTGATTTCAGGCTGGTTAGTGAC 670117 29 100.0 32 ............................. TAACGCCCGGCGGTATAGTCGATTTCGTGCTG 670178 29 100.0 32 ............................. ATTTATCCATTAGTCCCATAGCTGAGTCTCTT 670239 29 100.0 32 ............................. TCAACGTTACGACCGAACCACACCGATAAGAA 670300 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTATGCC 670361 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 670422 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 670483 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 670562 29 100.0 32 ............................. GCGCGCAACCCGGCATTTCACAGAAAATTTTT 670623 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 670684 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 670745 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 670806 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 670867 29 96.6 0 ............T................ | A [670894] ========== ====== ====== ====== ============================= ================================================== ================== 19 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTAGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //