Array 1 60603-59476 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNTT01000027.1 Escherichia coli strain MOD1-EC6657 MOD1-EC6657_27_length_62444_cov_46.8621, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60602 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 60541 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 60480 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 60419 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 60358 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 60297 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 60236 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 60175 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 60114 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 60053 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 59992 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 59931 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 59870 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 59809 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 59748 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 59687 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 59626 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 59565 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 59504 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24474-23793 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNTT01000029.1 Escherichia coli strain MOD1-EC6657 MOD1-EC6657_29_length_54729_cov_59.1846, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24473 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 24412 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 24351 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 24290 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 24229 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 24168 29 86.2 10 ..............G......G.G.G... TGTTTTATAC T,C,C [24140,24148,24153] Deletion [24130] 24126 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 24065 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 24004 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 23943 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 23882 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 23821 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //